Gene SbBS512_E0728 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E0728 
SymbolalkB 
ID6270708 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand+ 
Start bp687380 
End bp688030 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content53% 
IMG OID641724914 
Productalkylated DNA repair protein AlkB 
Protein accessionYP_001879442 
Protein GI187731684 
COG category[L] Replication, recombination and repair 
COG ID[COG3145] Alkylated DNA repair protein 
TIGRFAM ID[TIGR00568] DNA alkylation damage repair protein AlkB 


Plasmid Coverage information

Num covering plasmid clones31 
Plasmid unclonability p-value0.451763 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTGGATC TGTTTGCCGA TGCTGAACCG TGGCAAGAGC CACTGGCGGC TGGTGCGGTA 
ATTTTACGGC GTTTTGCTTT TAACGCTGCG GAGCAACTGA TCCGCGATAT TAATGACGTT 
GCCAGCCAGT CGCCGTTTCG CCAGATGGTC ACCCCCGGGG GATATACCAT GTCGGTGGCG 
ATGACCAACT GTGGGCATCT GGGCTGGACG ACCCATCGGC AAGGTTATCT CTATTCGCCC 
ATTGATCCGC AAACAAATAA ACCGTGGCCC GCCATGCCAC AAAGCTTTCA TGATTTATGT 
CAACGTGCGG CTACGGCGGC GGGCTATCCA GATTTCCAGC CAGATGCTTG TCTTATCAAC 
CGCTACGCTC CTGGCGCGAA ACTGTCGCTG CATCAGGATA AAGACGAACC GGATCTGCGC 
GCGCCAATTG TTTCTGTTTC TCTGGGCTTA CCCGCGATTT TTCAATTTGG TGGCCTGAAA 
CGTAATGATC CGCTCAAACG TTTGTTGTTG GAACATGGCG ATGTGGTGGT ATGGGGCGGT 
GAATCGCGGC TGTTTTATCA CGGTATTCAA CCGTTGAAAG CGGGGTTTCA TCCTCTCACC 
ACCGACTGCC GCTACAACCT GACATTCCGT CAGGCAGGTA AAAAAGAATA A
 
Protein sequence
MLDLFADAEP WQEPLAAGAV ILRRFAFNAA EQLIRDINDV ASQSPFRQMV TPGGYTMSVA 
MTNCGHLGWT THRQGYLYSP IDPQTNKPWP AMPQSFHDLC QRAATAAGYP DFQPDACLIN 
RYAPGAKLSL HQDKDEPDLR APIVSVSLGL PAIFQFGGLK RNDPLKRLLL EHGDVVVWGG 
ESRLFYHGIQ PLKAGFHPLT TDCRYNLTFR QAGKKE