| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E0654 |
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| Symbol | cydA |
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| ID | 6270603 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | + |
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| Start bp | 626313 |
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| End bp | 627881 |
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| Gene Length | 1569 bp |
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| Protein Length | 522 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641724850 |
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| Product | cytochrome d ubiquinol oxidase, subunit I |
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| Protein accession | YP_001879389 |
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| Protein GI | 187731907 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1271] Cytochrome bd-type quinol oxidase, subunit 1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.00624409 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTAGATA TAGTCGAACT GTCGCGCTTA CAGTTTGCCT TGACCGCGAT GTACCACTTC
CTTTTTGTGC CACTGACGCT CGGTATGGCG TTCCTGCTGG CCATTATGGA AACGGTCTAC
GTCCTCTCCG GCAAACAGAT TTATAAAGAT ATGACCAAGT TCTGGGGCAA GTTGTTTGGT
ATCAACTTCG CTCTGGGTGT GGCTACCGGT CTGACCATGG AGTTCCAGTT CGGGACTAAC
TGGTCTTACT ATTCCCACTA TGTAGGGGAT ATCTTCGGTG CGCCGCTGGC AATCGAAGGT
CTGATGGCCT TCTTCCTCGA ATCCACCTTT GTAGGTCTGT TCTTCTTCGG TTGGGATCGT
CTGGGTAAAG TTCAGCATAT GTGTGTCACC TGGCTGGTGG CGCTCGGTTC AAACCTGTCC
GCACTGTGGA TTCTGGTTGC GAACGGCTGG ATGCAAAACC CAATCGCGTC CGATTTCAAC
TTTGAAACTA TGCGTATGGA GATGGTGAGC TTCTCCGAGC TGGTGCTTAA CCCGGTTGCT
CAGGTGAAAT TCGTTCACAC TGTAGCGTCT GGTTATGTGA CTGGCGCGAT GTTCATCCTC
GGTATCAGCG CATGGTATAT GCTGAAAGGT CGTGACTTCG CCTTCGCTAA ACGCTCCTTT
GCTATCGCTG CCAGCTTCGG TATGGCTGCT GTTCTGTCTG TTATTGTTCT GGGTGATGAA
TCCGGCTACG AAATGGGCGA CGTGCAGAAA ACCAAACTGG CTGCTATTGA AGCCGAGTGG
GAAACGCAAC CTGCGCCTGC TGCCTTTACT CTGTTCGGCA TTCCTGATCA GGAAGAGGAG
ACGAACAAAT TTGCGATTCA GATCCCTTAC GCACTGGGCA TCATTGCAAC GCGTTCCGTG
GATACCCCGG TTATCGGCCT GAAAGAGCTG ATGGTGCAGC ATGAAGAACG CATTCGTAAC
GGGATGAAGG CGTACTCTCT GCTCGAACAA CTGCGTTCTG GTTCTACCGA CCAGGCGGTT
CGTGACCAGT TCAATAGCAT GAAGAAAGAC CTCGGTTACG GTCTGCTGCT GAAACGCTAT
ACGCCAAACG TGGCTGATGC GACTGAAGCG CAGATTCAAC AGGCAACCAA AGACTCCATT
CCGCGTGTAG CGCCGCTGTA CTTCGCGTTC CGTATTATGG TGGCGTGTGG CTTCCTGCTG
CTGGCAATCA TCGCGCTCTC TTTCTGGAGT GTCATCCGCA ACCGCATTGG CGAGAAAAAA
TGGCTGCTGC GCGCCGCGCT GTACGGTATT CCGCTGCCGT GGATTGCTGT AGAAGCGGGC
TGGTTCGTGG CTGAATATGG CCGCCAACCG TGGGCTATCG GTGAAGTGCT GCCGACAGCT
GTGGCGAATT CGTCACTGAC CGCAGGCGAT CTCATCTTCT CAATGGTGCT GATTTGCGGC
CTGTATACCC TGTTCCTGGT GGCAGAATTG TTCTTAATGT TCAAATTTGC ACGCCTCGGC
CCAAGCAGCC TGAAAACCGG TCGCTATCAC TTTGAGCAGT CTTCCACGAC TACTCAGCCG
GCACGCTAA
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| Protein sequence | MLDIVELSRL QFALTAMYHF LFVPLTLGMA FLLAIMETVY VLSGKQIYKD MTKFWGKLFG
INFALGVATG LTMEFQFGTN WSYYSHYVGD IFGAPLAIEG LMAFFLESTF VGLFFFGWDR
LGKVQHMCVT WLVALGSNLS ALWILVANGW MQNPIASDFN FETMRMEMVS FSELVLNPVA
QVKFVHTVAS GYVTGAMFIL GISAWYMLKG RDFAFAKRSF AIAASFGMAA VLSVIVLGDE
SGYEMGDVQK TKLAAIEAEW ETQPAPAAFT LFGIPDQEEE TNKFAIQIPY ALGIIATRSV
DTPVIGLKEL MVQHEERIRN GMKAYSLLEQ LRSGSTDQAV RDQFNSMKKD LGYGLLLKRY
TPNVADATEA QIQQATKDSI PRVAPLYFAF RIMVACGFLL LAIIALSFWS VIRNRIGEKK
WLLRAALYGI PLPWIAVEAG WFVAEYGRQP WAIGEVLPTA VANSSLTAGD LIFSMVLICG
LYTLFLVAEL FLMFKFARLG PSSLKTGRYH FEQSSTTTQP AR
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