| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E0650 |
|---|
| Symbol | |
|---|
| ID | 6268834 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | + |
|---|
| Start bp | 621448 |
|---|
| End bp | 623364 |
|---|
| Gene Length | 1917 bp |
|---|
| Protein Length | 638 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641724847 |
|---|
| Product | PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC |
|---|
| Protein accession | YP_001879386 |
|---|
| Protein GI | 187732566 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG1299] Phosphotransferase system, fructose-specific IIC component
[COG1445] Phosphotransferase system fructose-specific component IIB
[COG1762] Phosphotransferase system mannitol/fructose-specific IIA domain (Ntr-type) |
|---|
| TIGRFAM ID | [TIGR00829] PTS system, fructose-specific, IIB component
[TIGR00848] PTS system, fructose subfamily, IIA component
[TIGR01427] PTS system, fructose subfamily, IIC component |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 31 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATCTGA CGACTCTGAC CCACCGCGAT GCGTTGCGTC TGAATGCGCG CTTTACCAGC
CGTGAAGAGG CCATCCACGC GTTGACTCAA CGTCTTGCTG CTCTGGGGAA AATTTCCAGT
ACTGAGCAAT TTCTGGAAGA AGTGTATCGC CGTGAAAGCC TTGGCCCGAC CGCCTTAGGT
GAAGGGTTGG CTGTGCCGCA TGGCAAAACT GCTGCGGTAA AAGAAGCGGC GTTTGCGGTC
GCCACACTCA GCGAGCCGCT TCAGTGGGAA GGCGTTGATG GCCCGGAAGC AGTTGATTTA
GTGGTGCTGC TGGCGATTCC CCCCAATGAA GCGGGTACTA TGCATATGCA ACTGCTGACA
GCGCTGACCA CGCGCCTTGC GGATGATGAG ATTCGGGCGC GTATACAGTC GGCGACGACG
CCTGATGAGT TGCTCTCGGC GCTGGATGAC AAGGGAGGCA CGCAACCTTC TGCCTCTTTT
TCCAACGCGC CAACTATCGT CTGCGTAACG GCCTGTCCGG CGGGTATTGC TCACACCTAT
ATGGCTGCGG AATATCTGGA AAAAGCCGGA CGCAAACTCG GCGTAAATGT TTACGTTGAA
AAACAAGGCG CTAACGGCAT TGAAGGGCGT TTAACGGCGG ATCAACTCAA TAGTGCAACC
GCCTGTATTT TTGCGGCTGA AGTCGCCATC AAGGAGAGTG AGCGTTTTAA TGGCATTCCC
GCGCTTTCAG TGCCTGTTGC CGAGCCGATT CGCCATGCAG AAGCGTTGAT CCAACAAGCG
CTTACCCTCA AGCGTAGCGA TGAGACGCGT ACCGTACAGC AAGATACGCA ACCGGTGAAA
AGTGTCAAAA CGGAGCTGAA ACAGGCACTG TTGAGCGGAA TCTCTTTTGC CGTACCGTTG
ATTGTCGCGG GGGGCACGGT GCTGGCGGTC GCGGTATTAC TGTCGCAAAT CTTCGGGCTA
CAAGATCTGT TTAATGAAGA AAACTCCTGG CTGTGGATGT ACCGCAAGCT GGGCGGCGGG
CTGCTCGGAA TTTTGATGGT ACCGGTGCTC GCGGCCTATA CCGCCTATTC TCTGGCAGAT
AAACCGGCGT TAGCGCCAGG CTTTGCGGCT GGACTTGCCG CCAACATGAT CGGCTCCGGG
TTTCTCGGCG CGGTTGTTGG CGGATTGATA GCCGGTTACT TGATGCGCTG GGTGAAAAAT
CACTTGCGTC TTAGCAGTAA ATTCAATGGA TTCCTGACTT TTTATCTCTA CCCGGTGCTC
GGTACGTTGG GAGCGGGCAG TCTGATGCTG TTTGTGGTGG GAGAACCTGT CGCATGGATC
AATAACTCGC TTACCGCCTG GCTGAACGGT CTGTCAGGAA GTAACGCGCT GTTGCTGGGT
GCCATTTTCG GTTTTATGTG TTCCTTTGAC CTTGGAGGGC CAGTGAACAA AGCCGCTTAT
GCATTCTGCC TGGGCGCAAT GGCGAACGGC GTTTACGGCC CGTATGCCAT TTTCGCCTCC
GTCAAAATGG TTTCGGCATT TACCGTAACC GCTTCCACGA TGCTCGCACC GCGCCTGTTT
AAAGAGTTTG AAATTGAGAC CGGGAAATCC ACCTGGCTGT TAGGGCTGGC AGGTATTACC
GAAGGGGCGA TCCCGATGGC GATTGAAGAT CCGCTGCGGG TTATTGGTTC GTTTGTGCTG
GGCTCTATGG TAACGGGCGC TATTGTCGGT GCGATGAATA TCGGCCTTTC GACACCCGGT
GCCGGCATTT TCTCGCTCTT TTTACTTCAT GATAATGGCG CGGGCGGTGT TATGGCGGCA
ATTGGCTGGT TTGGTGCGGC ATTGGTGGGG GCTGCAATCT CGACTGCAAT TCTCCTGATC
TGGCGGCGTC ACGCGGTTAA GCATGGCAAC TATCTGACTG ATGGCGTAAT GCCATAA
|
|---|
| Protein sequence | MNLTTLTHRD ALRLNARFTS REEAIHALTQ RLAALGKISS TEQFLEEVYR RESLGPTALG
EGLAVPHGKT AAVKEAAFAV ATLSEPLQWE GVDGPEAVDL VVLLAIPPNE AGTMHMQLLT
ALTTRLADDE IRARIQSATT PDELLSALDD KGGTQPSASF SNAPTIVCVT ACPAGIAHTY
MAAEYLEKAG RKLGVNVYVE KQGANGIEGR LTADQLNSAT ACIFAAEVAI KESERFNGIP
ALSVPVAEPI RHAEALIQQA LTLKRSDETR TVQQDTQPVK SVKTELKQAL LSGISFAVPL
IVAGGTVLAV AVLLSQIFGL QDLFNEENSW LWMYRKLGGG LLGILMVPVL AAYTAYSLAD
KPALAPGFAA GLAANMIGSG FLGAVVGGLI AGYLMRWVKN HLRLSSKFNG FLTFYLYPVL
GTLGAGSLML FVVGEPVAWI NNSLTAWLNG LSGSNALLLG AIFGFMCSFD LGGPVNKAAY
AFCLGAMANG VYGPYAIFAS VKMVSAFTVT ASTMLAPRLF KEFEIETGKS TWLLGLAGIT
EGAIPMAIED PLRVIGSFVL GSMVTGAIVG AMNIGLSTPG AGIFSLFLLH DNGAGGVMAA
IGWFGAALVG AAISTAILLI WRRHAVKHGN YLTDGVMP
|
|---|
| |