Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E0611 |
Symbol | holA |
ID | 6272529 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 583275 |
End bp | 584306 |
Gene Length | 1032 bp |
Protein Length | 343 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641724811 |
Product | DNA polymerase III subunit delta |
Protein accession | YP_001879350 |
Protein GI | 187730370 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1466] DNA polymerase III, delta subunit |
TIGRFAM ID | [TIGR01128] DNA polymerase III, delta subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0000798532 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTCGGT TGTACCCGGA ACAACTCCGC GCGCAGCTCA ATGAAGGGCT GCGCGCGGCG TATCTTTTAC TTGGTAACGA TCCTCTGTTA TTGCAGGAAA GCCAGGACGC TGTTCGTCAG GTAGCTGCGG CACAAGGATT CGAAGAACAC CACACTTTTT CCATTGATCC CAACACTGAC TGGAATGCGA TCTTTTCGTT ATGCCAGGCT ATGAGTCTGT TTGCCAGTCG ACAAACGCTA TTGCTGTTGT TACCAGAAAA CGGACCGAAT GCGGCGATCA ATGAACAACT TCTCACACTC ACCGGACTTC TGCATGACGA CCTGCTGTTG ATCGTCCGCG GTAATAAATT AAGCAAAGCG CAAGAAAATG CCGCCTGGTT TACTGCGCTT GCGAATCGCA GCGTGCAGGT GACCTGTCAG ACACCGGAGC AGGCTCAGCT TCCCCGCTGG GTTGCTGCGC GCGCAAAACA GCTCAACTTA GAACTGGATG ACGCGGCAAA TCAGGTGCTC TGCTACTGTT ATGAAGGTAA CCTGCTGGCG CTGGCTCAGG CACTGGAGCG TTTATCGCTG CTCTGGCCAG ACGGCAAATT GACATTACCG CGCGTTGAAC AGGCGGTGAA TGATGCCGCG CATTTCACCC CTTTTCATTG GGTTGATGCT TTGTTGATGG GAAAAAGTAA GCGCACATTG CATATTCTTC AGCAACTGCG TCTGGAAGGC AGCGAACCGG TTATTTTGTT GCGCACATTA CAACGTGAAC TGTTGTTACT GGTTAACCTG AAACGCCAGT CTGCCCATAC GCCACTGCGT GCGTTGTTTG ATAAGCATCG GGTATGGCAG AACCGCCGGG GCATGATGGG CGAGGCGTTA AATCGCTTAA GTCAGATGCA GTTACGTCAG GCCGTGCAAC TCCTGACACG AACGGAACTC ACCCTCAAAC AAGATTACGG TCAGTTAGTG TGGGCAGAGC TGGAAGGGTT ATCTCTTCTG TTGTGCCATA AACCCCTGGC GGACGTATTT ATCGACGGTT GA
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Protein sequence | MIRLYPEQLR AQLNEGLRAA YLLLGNDPLL LQESQDAVRQ VAAAQGFEEH HTFSIDPNTD WNAIFSLCQA MSLFASRQTL LLLLPENGPN AAINEQLLTL TGLLHDDLLL IVRGNKLSKA QENAAWFTAL ANRSVQVTCQ TPEQAQLPRW VAARAKQLNL ELDDAANQVL CYCYEGNLLA LAQALERLSL LWPDGKLTLP RVEQAVNDAA HFTPFHWVDA LLMGKSKRTL HILQQLRLEG SEPVILLRTL QRELLLLVNL KRQSAHTPLR ALFDKHRVWQ NRRGMMGEAL NRLSQMQLRQ AVQLLTRTEL TLKQDYGQLV WAELEGLSLL LCHKPLADVF IDG
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