| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E0575 |
|---|
| Symbol | nagC |
|---|
| ID | 6269452 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | + |
|---|
| Start bp | 552266 |
|---|
| End bp | 553486 |
|---|
| Gene Length | 1221 bp |
|---|
| Protein Length | 406 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 641724779 |
|---|
| Product | N-acetylglucosamine repressor |
|---|
| Protein accession | YP_001879326 |
|---|
| Protein GI | 187732647 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[K] Transcription |
|---|
| COG ID | [COG1940] Transcriptional regulator/sugar kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 0.20725 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACACCAG GCGGACAAGC TCAGATAGGT AATGTTGATC TCGTAAAACA GCTTAACAGC
GCGGCGGTTT ATCGCCTGAT TGACCAGTAC GGGCCAATCT CGCGGATTCA GATTGCCGAG
CAAAGCCAGC TTGCCCCCGC CAGCGTAACC AAAATTACGC GTCAGCTTAT CGAACGCGGG
CTGATCAAAG AAGTTGATCA GCAGGCCTCC ACCGGGGGCC GCCGCGCTAT CTCCATCGTC
ACCGAAACCC GCAATTTCCA CGCAATCGGC GTACGGCTTG GTCGTCACGA CGCCACCATC
ACCCTGTTTG ATCTCAGCAG CAAAGTGCTG GCAGAAGAAC ATTACCCGCT GCCGGAACGT
ACCCAGCAAA CGCTGGAACA TGCCCTGTTG AATGCCATTG CTCAGTTTAT TGATAGCTAC
CAGCGCAAAC TGCGCGAGCT GATCGCGATT TCGGTGATCC TGCCAGGGCT TGTTGACCCG
GACAGCGGCA AAATTCATTA CATGCCGCAT ATTCAGGTAG AAAACTGGGG GCTGGTAGAA
GCTCTGGAAG AACGTTTTAA AGTGACCTGT TTCGTTGGTC ACGATATCCG TAGTCTGGCG
CTGGCGGAGC ACTACTTCGG TGCAAGTCAG GATTGCGAAG ACTCCATTCT GGTGCGTGTC
CATCGCGGAA CCGGGGCCGG GATTATCTCT AACGGGCGCA TTTTTATTGG CCGCAACGGT
AACGTCGGTG AAATTGGCCA TATTCAGGTC GAACCGCTGG GTGAACGCTG CCACTGCGGC
AACTTTGGCT GCCTGGAAAC TATCGCCGCC AACGCTGCCA TTGAACAACG GGTGTTGAAT
CTGTTAAAGC AGGGCTACCA GAGCCGCGTG CCGCTGGACG ACTGCACCAT CAAAACTATC
TGCAAAGCCG CGAACAAAGG CGATAGTCTG GCGTCGGAAG TAATTGAGTA TGTCGGTCGT
CATCTGGGTA AAACCATCGC CATTGCTATC AACTTATTTA ATCCGCAAAA AATTGTTATT
GCCGGTGAAA TCACCGAAGC CGATAAAGTG CTGCTCCCTG CTATTGAAAG CTGCATTAAT
ACCCAGGCGC TGAAGGCGTT TCGCACTAAT CTGCCGGTGG TACGTTCTGA GCTGGATCAC
CGCTCGGCAA TCGGCGCTTT TGCGCTGGTA AAACGCGCCA TGCTCAACGG TATTTTGCTC
CAGCATTTGC TGGAAAATTA A
|
|---|
| Protein sequence | MTPGGQAQIG NVDLVKQLNS AAVYRLIDQY GPISRIQIAE QSQLAPASVT KITRQLIERG
LIKEVDQQAS TGGRRAISIV TETRNFHAIG VRLGRHDATI TLFDLSSKVL AEEHYPLPER
TQQTLEHALL NAIAQFIDSY QRKLRELIAI SVILPGLVDP DSGKIHYMPH IQVENWGLVE
ALEERFKVTC FVGHDIRSLA LAEHYFGASQ DCEDSILVRV HRGTGAGIIS NGRIFIGRNG
NVGEIGHIQV EPLGERCHCG NFGCLETIAA NAAIEQRVLN LLKQGYQSRV PLDDCTIKTI
CKAANKGDSL ASEVIEYVGR HLGKTIAIAI NLFNPQKIVI AGEITEADKV LLPAIESCIN
TQALKAFRTN LPVVRSELDH RSAIGAFALV KRAMLNGILL QHLLEN
|
|---|
| |