Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E0397 |
Symbol | kefA |
ID | 6269291 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 384794 |
End bp | 388156 |
Gene Length | 3363 bp |
Protein Length | 1120 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641724625 |
Product | potassium efflux protein KefA |
Protein accession | YP_001879175 |
Protein GI | 187731930 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3264] Small-conductance mechanosensitive channel |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACTATGT TCCAGTATTA CAAACGATCA CGGCATTTTG TTTTTTCAGC ATTTATTGCT TTTGTTTTTG TCTTGTTATG CCAGAACACG GCGTTTGCGC GGGCGTCATC GAATGGTGAT CTGCCGACAA AAGCGGACCT GCAGGCGCAA CTTGACTCAC TAAATAAACA AAAAGATCTT TCTGCTCAGG ACAAACTGGA GCAGCAGGAT CTGACAGATA CATTAGCCAC CCTCGATAAA ATCGATCGCA TAAAAGAAGA GACAGTTCAG CTACGGCAAA AAGTCGCTGA AGCGCCGGAA AAAATGCGCC AGGCGACCGC GGCGTTAACA GCACTTAGCG ATGTCGATAA CGACGAAGAA ACGCGCAAAA TTCTGAGTAC GCTTTCGTTG CGCCAGCTGG AAACTCGCGT TGCCCAGGCG CTGGACGATT TGCAAAACGC ACAAAACGAT CTGGCGTCTT ATAACAGCCA GCTGGTTTCG TTACAGACGC AGCCCGAACG CGTGCAAAAT GCGATGTATA ACGCTTCGCA GCAGCTGCAA CAAATTCGCA GTCGTCTGGA TGGGACTGAT GTCGGCGAGA CTGCCTTACG TCCCAGCCAG AAAGTGTTAA TGCAGGCTCA GCAGGCGTTG CTGAATGCGG AGATTGACCA GCAGCGTAAA AGCCTGGAAG GGAACACCGT CTTGCAGGAT ACCTTGCAAA AGCAACGTGA TTACGTGACG GCGAACAGCG CCCGTCTGGA GCACCAGTTG CAGCTGTTGC AAGAAGCGGT AAACAGCAAG CGCCTGACTT TAACTGAAAA AACGGCGCAG GAAGCCGTCT CCCCGGATGA AGCCGCGCGT ATTCAGGCTA ATCCGCTGGT GAAACAGGAA CTGGAAATTA ACCAGCAGTT AAGTCAGCGT CTGATTACCG CGACTGAAAA CGGTAATCAG TTGATGCAGC AAAACATTAA AGTCAAAAAC TGGCTGGAGC GGGCGCTGCA ATCGGAACGC AATATTAAAG AGCAGATTGC CGTCCTGAAG GGCAGCCTGC TGTTGTCTCG TATCCTTTAC CAGCAACAAC AAACGCTGCC CTCGGCGGAT GAACTGGAAA ACATGACCAA CCGCATCGCG GATTTGCGTC TCGAACAGTT TGAAGTTAAC CAGCAGCGTG ATGCACTCTT CCAGAGCGAT GCGTTCGTCA ACAAACTGGA AGAAGGTCAC ACCAACGAAG TCAACAGCGA AGTTCACGAT GCGTTATTGC AAGTGGTTGA TATGCGTCGC GAATTGCTGG ATCAACTCAA CAAACAGTTG GGTAACCAGC TGATGATGGC CATTAACCTG CAAATCAACC AGCAGCAGTT AATGAGCGTA TCGAAAAACC TGAAATCCAT CCTGACTCAG CAAATCTTTT GGGTGAACAG TAACCGTCCA ATGGACTGGG ACTGGATCAA AGCGTTCCCG CAAAGCCTGA AAGATGAATT TAAGTCGATG AAAATCACGG TGAACTGGGA AAAAGCCTGG CCTGCCGTTT TTATCGCTTT CCTCGCCGGT TTGCCGCTGC TGTTGATTGC CGGGCTGATC CACTGGCGTC TGGGCTGGCT GAAAGCGTAT CAACAAAAAC TGGCTTCCGC TGTGGGTTCC CTGCGTAACG ATAGCCAGCT CAACACACCA AAAGCGATCC TTATCGACCT GATCCGCGCG CTGCCGGTGT GCCTGATTAT TCTCGCGGTT GGCCTGATTC TGTTGACCAT GCAGCTCAAC ATCAGCGAAC TGCTATGGTC GTTCAGCAAA AAACTGGCGA TTTTCTGGCT GGTGTTTGGC CTGTGCTGGA AGGTACTGGA GAAGAACGGC GTTGCCGTGC GTCACTTCGG CATGCCGGAA CAGCAGACCA GCCACTGGCG TCGGCAAATT GTCCGCATCA GTCTCGCATT GCTGCCTATC CATTTCTGGT CTGTGGTGGC AGAACTTTCC CCGCTGCATC TGATGGATGA TGTGCTGGGG CAAGCGATGA TTTTCTTCAA CCTGCTGCTG ATTGCCTTCC TGGTATGGCC AATGTGCCGC GAAAGCTGGC GTGATAAAGA GTCGCACACC ATGCGACTGG TCACCATTAC CGTGCTGTCG ATTATCCCGA TTGCATTGAT GGTGCTGACT GCCACGGGTT ATTTCTACAC CACGCTGCGC CTCTCCGGGC GTTGGATTGA AACCGTTTAT CTGGTGATCA TCTGGAACTT GCTCTACCAG ACGGTATTGC GCGGCTTAAG CGTAGCGGCG CGGCGTATCG CCTGGCGTCG TGCGCTGGCG CGTCGGCAGA ATCTGGTGAA AGAGGGCGCA GAAGGTGCCG AACCGCCGGA AGAACCCACC ATTGCACTGG AACAGGTTAA CCAGCAGACG CTGCGTATTA CCATGTTGCT GATGTTTGCG CTGTTCGGTG TCATGTTCTG GGCAATTTGG TCCGATTTGA TCACCGTGTT CAGCTATCTC GACAGCATTA CGCTCTGGCA TTACAACGGT ACTGAAGCTG GCGCTGCGGT GGTGAAAAAC GTCACCATGG GCAGTCTGTT GTTTGCGATT ATCGCCTCAA TGGTGGCCTG GGCGTTGATT CGCAACCTGC CTGGTTTGCT GGAAGTGCTG GTGCTCTCGC GACTGAATAT GCGCCAGGGC GCGTCGTATG CCATTACTAC CATCCTTAAC TACATCATTA TTGCCGTTGG TGCGATGACG GTGTTCGGAT CGCTGGGCGT CTCTTGGGAT AAACTCCAGT GGCTGGCGGC AGCATTATCC GTAGGTCTTG GTTTTGGTTT ACAAGAAATT TTCGGTAACT TCGTCTCCGG TTTGATCATT CTGTTCGAAC GTCCGGTGCG TATTGGCGAT ACGGTAACCA TTGGTAGCTT CTCGGGGACG GTAAGTAAGA TCCGTATTCG TGCGACAACG ATTACCGATT TCGATCGCAA AGAAGTGATC ATCCCGAACA AAGCGTTTGT TACCGAGCGT CTGATCAACT GGTCGTTGAC TGACACTACT ACGCGTCTGG TGATCCGTCT CGGCGTGGCC TATGGCTCCG ATCTGGAAAA AGTGCGTAAA GTGTTACTGA AGGCGGCGAC TGAGCACCCA AGGGTGATGC ACGAACCAAT GCCGGAAGTC TTCTTTACGG CGTTTGGTGC CAGCACGTTG GATCATGAGC TGCGTCTGTA TGTGCGTGAA CTGCGTGACC GTAGTCGTAC TGTCGATGAG CTGAACCGTA CTATCGATCA GCTGTGCCGT GAAAACGACA TCAACATTGC CTTTAACCAG CTTGAAGTGC ATCTGCACAA CGAGAAGGGC GATGAGGTGA CGGAAGTAAA ACGCGACTAC AAAGGCGATG ACCCGACGCC AGCGGTAGGG TAA
|
Protein sequence | MTMFQYYKRS RHFVFSAFIA FVFVLLCQNT AFARASSNGD LPTKADLQAQ LDSLNKQKDL SAQDKLEQQD LTDTLATLDK IDRIKEETVQ LRQKVAEAPE KMRQATAALT ALSDVDNDEE TRKILSTLSL RQLETRVAQA LDDLQNAQND LASYNSQLVS LQTQPERVQN AMYNASQQLQ QIRSRLDGTD VGETALRPSQ KVLMQAQQAL LNAEIDQQRK SLEGNTVLQD TLQKQRDYVT ANSARLEHQL QLLQEAVNSK RLTLTEKTAQ EAVSPDEAAR IQANPLVKQE LEINQQLSQR LITATENGNQ LMQQNIKVKN WLERALQSER NIKEQIAVLK GSLLLSRILY QQQQTLPSAD ELENMTNRIA DLRLEQFEVN QQRDALFQSD AFVNKLEEGH TNEVNSEVHD ALLQVVDMRR ELLDQLNKQL GNQLMMAINL QINQQQLMSV SKNLKSILTQ QIFWVNSNRP MDWDWIKAFP QSLKDEFKSM KITVNWEKAW PAVFIAFLAG LPLLLIAGLI HWRLGWLKAY QQKLASAVGS LRNDSQLNTP KAILIDLIRA LPVCLIILAV GLILLTMQLN ISELLWSFSK KLAIFWLVFG LCWKVLEKNG VAVRHFGMPE QQTSHWRRQI VRISLALLPI HFWSVVAELS PLHLMDDVLG QAMIFFNLLL IAFLVWPMCR ESWRDKESHT MRLVTITVLS IIPIALMVLT ATGYFYTTLR LSGRWIETVY LVIIWNLLYQ TVLRGLSVAA RRIAWRRALA RRQNLVKEGA EGAEPPEEPT IALEQVNQQT LRITMLLMFA LFGVMFWAIW SDLITVFSYL DSITLWHYNG TEAGAAVVKN VTMGSLLFAI IASMVAWALI RNLPGLLEVL VLSRLNMRQG ASYAITTILN YIIIAVGAMT VFGSLGVSWD KLQWLAAALS VGLGFGLQEI FGNFVSGLII LFERPVRIGD TVTIGSFSGT VSKIRIRATT ITDFDRKEVI IPNKAFVTER LINWSLTDTT TRLVIRLGVA YGSDLEKVRK VLLKAATEHP RVMHEPMPEV FFTAFGASTL DHELRLYVRE LRDRSRTVDE LNRTIDQLCR ENDINIAFNQ LEVHLHNEKG DEVTEVKRDY KGDDPTPAVG
|
| |