| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E0364 |
|---|
| Symbol | ppiD |
|---|
| ID | 6272219 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | + |
|---|
| Start bp | 355965 |
|---|
| End bp | 357836 |
|---|
| Gene Length | 1872 bp |
|---|
| Protein Length | 623 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 641724602 |
|---|
| Product | peptidyl-prolyl cis-trans isomerase (rotamase D) |
|---|
| Protein accession | YP_001879152 |
|---|
| Protein GI | 187732708 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0760] Parvulin-like peptidyl-prolyl isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.0524486 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATGGACA GCTTACGCAC GGCTGCAAAC AGTCTCGTGC TCAAGATTAT TTTCGGTATC
ATTATCGTGT CGTTCATATT GACCGGCGTG AGTGGTTACC TGATTGGCGG AGGCAATAAC
TACGCCGCAA AAGTGAATGA CCAGGAAATC AGCCGTGGGC AGTTCGAGAA CGCCTTTAAC
AGCGAGCGTA ATCGCATGCA GCAACAGCTG GGCGATCAAT ACTCCGAGCT GGCAGCGAAT
GAAGGCTATA TGAAAACCCT GCGTCAACAG GTGCTGAATC GTCTGATCGA CGAGGCGCTG
TTGGATCAGT ACGCTCGTGA GCTGAAACTG GGTATCAGTG ATGAGCAGGT TAAACAGGCG
ATTTTCGCGA CCCCAGCCTT CCAGGTTGAT GGCAAATTTG ATAACAGCCG CTATAACGGT
ATCCTCAACC AGATGGGGAT GACCGCCGAT CAGTACGCCC AGGCGCTGCG TAACCAGCTC
ACTACCCAAC AGCTGATTAA CGGTGTTGCC GGTACCGATT TTATGCTGAA AGGTGAAACC
GACGAGCTGG CGGCACTGGT CGCGCAACAA CGCGTGGTGC GTGAGGCGAC TATCGATGTT
AACGCGCTGG CGGCGAAGCA GCCTGTGACC GAACAGGAGA TTGCCAGCTA CTACGAACAA
AACAAAAACA ATTTCATGAC GCCGGAACAA TTCCGCGTGA GTTACATCAA GCTGGATGCC
GCAACGATGC AGCAACCGGT TAGCGATGCG GATATCCAGA GCTACTACGA TCAGCATCAG
GATCAATTCA CCCAGCCGCA GCGTACCCGC TACAGCATCA TCCAGACCAA AACTGAAGAT
GAAGCGAAAG CGGTACTTGA TGAGCTGAAT AAAGGCGGTG ATTTTGCTGC ATTAGCCAAA
GAAAAATCTG CCGATATTAT CTCTGCCCGT AACGGCGGCG ATATGGGTTG GTTAGAAGAT
GCCACTATCC CCGACGAACT GAAAAATGCT GGTCTAAAAG AAAAAGGCCA ACTGTCTGGT
GTCATCAAAT CTTCGGTCGG TTTCCTGATT GTACGTCTGG ACGACATTCA TCCAGCGAAA
GTGAAATCGT TAGACGAAGT ACGTGACGAC ATTGCGGCGA AAGTGAAACA CGAAAAAGCC
CTCGATGCGT ACTATGCGCT GCAGCAGAAA GTGAGCGATG CGGCAAGCAA CGACACCGAG
TCTCTGGCCG GTGCAGAGCA AGCTGCCGGC GTTAAAGCCA CTCAGACGGG TTGGTTCAGC
AAAGATAACC TGCCGGAAGA GTTGAACTTC AAGCCGGTTG CCGACGCTAT CTTTAACGGC
GGTCTGGTAG GTGAAAACGG CGCGCCGGGC ATCAACTCTG ACATCATCAC CGTAGACGGC
GACCGTGCAT TCGTGCTGCG CATCAGCGAG CACAAACCGG AAGCGGTGAA ACCGTTGGCA
GATGTTCAGG AACAAGTTAA GGCACTGGTT CAGCACAACA AAGCTGAACA ACAGGCGAAA
GTGGATGCTG AGAAACTGCT GGTTGATTTG AAAGCCGGCA AAGGTGCGGA AGCTATGCAG
GCTGCCGGTC TGAAATTTGG CGAGCCGAAA ACCTTAAGCC GTTCCGGTCG TGACCCGATT
AGCCAGGCGG CGTTTGCACT GCCACTGCCA GCGAAAGACA AACCGAGCTA CGGTATGGCG
ACCGATATGC AAGGTAATGT GGTTCTGCTG GCGCTGGATG AAGTGAAACA AGGTTCAATG
CCGGAAGATC AGAAAAAAGC GATGGTGCAG GGTATCACCC AGAACAACGC ACAAATCGTC
TTTGAAGCTC TGATGAGTAA CCTGCGTAAA GAGGCGAAAA TCAAAATTGG CGATGCGCTG
GAACAGCAAT AA
|
|---|
| Protein sequence | MMDSLRTAAN SLVLKIIFGI IIVSFILTGV SGYLIGGGNN YAAKVNDQEI SRGQFENAFN
SERNRMQQQL GDQYSELAAN EGYMKTLRQQ VLNRLIDEAL LDQYARELKL GISDEQVKQA
IFATPAFQVD GKFDNSRYNG ILNQMGMTAD QYAQALRNQL TTQQLINGVA GTDFMLKGET
DELAALVAQQ RVVREATIDV NALAAKQPVT EQEIASYYEQ NKNNFMTPEQ FRVSYIKLDA
ATMQQPVSDA DIQSYYDQHQ DQFTQPQRTR YSIIQTKTED EAKAVLDELN KGGDFAALAK
EKSADIISAR NGGDMGWLED ATIPDELKNA GLKEKGQLSG VIKSSVGFLI VRLDDIHPAK
VKSLDEVRDD IAAKVKHEKA LDAYYALQQK VSDAASNDTE SLAGAEQAAG VKATQTGWFS
KDNLPEELNF KPVADAIFNG GLVGENGAPG INSDIITVDG DRAFVLRISE HKPEAVKPLA
DVQEQVKALV QHNKAEQQAK VDAEKLLVDL KAGKGAEAMQ AAGLKFGEPK TLSRSGRDPI
SQAAFALPLP AKDKPSYGMA TDMQGNVVLL ALDEVKQGSM PEDQKKAMVQ GITQNNAQIV
FEALMSNLRK EAKIKIGDAL EQQ
|
|---|
| |