Gene SbBS512_E0341 details

Gene Information

• Locus tag: SbBS512_E0341
• Symbol: dxs
• ID: 6270469
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: -
• Start bp: 332364
• End bp: 334226
• Gene Length: 1863 bp
• Protein Length: 620 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 641724579
• Product: 1-deoxy-D-xylulose-5-phosphate synthase
• Protein accession: YP_001879129
• Protein GI: 187732272
• COG category: [H] Coenzyme transport and metabolism; [I] Lipid transport and metabolism
• COG ID: [COG1154] Deoxyxylulose-5-phosphate synthase
• TIGRFAM ID: [TIGR00204] 1-deoxy-D-xylulose-5-phosphate synthase

Plasmid Coverage information

• Num covering plasmid clones: 38
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAGTTTTG ATATTGCCAA ATACCCGACC CTGGCACTGG TCGACTCCAC CCAGGAGTTA 
CGACTGTTGC CGAAAGAGAG TTTACCGAAA CTCTGCGACG AACTGCGCCG CTATTTACTC 
GACAGCGTGA GCCGTTCCAG CGGGCACTTC GCCTCCGGGC TGGGCACGGT CGAACTGACC 
GTGGCGCTGC ACTATGTCTA CAACACCCCG TTTGACCAAT TGATTTGGGA TGTGGGGCAT 
CAGGCTTATC CGCATAAAAT TTTGACCGGA CGCCGCGACA AAATCGGCAC CATCCGTCAG 
AAAGGCGGCC TGCACCCGTT CCCGTGGCGC GGCGAAAGCG AATATGACGT ATTAAGCGTC 
GGGCATTCAT CAACCTCCAT CAGTGCCGGA ATTGGTATTG CGGTTGCTGC CGAGAAAGAA 
GGCAAAAATC GCCGTACCGT CTGTGTAATC GGCGATGGCG CGATTACCGC AGGCATGGCG 
TTTGAAGCGA TGAATCACGC GGGCGATATC CGTCCTGATA TGCTGGTGGT CCTCAACGAC 
AACGAAATGT CGATTTCCGA AAATGTCGGC GCGCTCAACA ACCATCTGGC GCAGCTGCTT 
TCCGGTAAGC TTTACTCTTC ACTGCGCGAA GGCGGGAAAA AAGTTTTCTC TGGCGTGCCA 
CCCATTAAAG AGCTGCTCAA ACGTACCGAA GAACATATTA AAGGCATGGT AGTCCCTGGC 
ACGTTGTTTG AAGAGCTGGG CTTTAACTAC ATCGGCCCGG TTGACGGTCA CGATGTGCTG 
GGGCTTATCA CCACGCTGAA GAACATGCGT GACCTGAAAG GCCCGCAGTT CCTGCATATC 
ATGACCAAAA AAGGTCGTGG TTATGAACCG GCAGAAAAAG ACCCAATCAC TTTCCACGCC 
GTGCCTAAAT TTGATCCCTC CAGCGGTTGT TTGCCGAAAA GTAGCGGCGG TTTACCGAGC 
TATTCAAAAA TCTTTGGCGA CTGGTTGTGC GAAACGGCGG CGAAAGATAA CAAGCTGATG 
GCGATTACTC CGGCGATGCG TGAAGGTTCC GGCATGGTCG AGTTTTCTCG TAAATTCCCG 
GATCGCTACT TCGACGTGGC AATTGCCGAG CAACACGCAG TGACCTTTGC CGCCGGTCTG 
GCGATTGGTG GGTACAAACC CATTGTCGCG ATCTACTCCA CTTTCCTGCA ACGCGCCTAT 
GATCAGGTGC TGCATGACGT GGCAATTCAA AAGCTTCCGG TCCTGTTCGC CATCGACCGC 
GCGGGCATTG TTGGTGCTGA CGGTCAAACC CATCAGGGTG CTTTTGATCT CTCTTACCTG 
CGCTGCATAC CGGAAATGGT CATTATGACC CCGAGCGATG AAAACGAATG TCGCCAGATG 
CTCTATACCG GCTATCACTA TAACGATGGC CCGTCAGCGG TGCGCTACCC GCGTGGCAAC 
GCGGTCGGCG TGGAACTGAC GCCGCTGGAA AAACTACCAA TTGGCAAAGG CATTGTGAAG 
CGTCGTGGCG AGAAACTGGC GATCCTTAAC TTTGGTACGC TGATGCCAGA AGCGGCGAAA 
GTCGCCGAAT CGCTGAACGC CACGCTGGTC GATATGCGTT TTGTGAAACC GCTTGATGAA 
GCGTTAATTC TGGAAATGGC CGCCAGTCAT GAAGCACTGG TTACCGTAGA AGAAAACGCC 
ATTATGGGCG GTGCAGGCAG CGGAGTGAAC GAAGTACTAA TGGCCCATCG TAAACCAGTC 
CCCGTGCTGA ACATTGGCCT GCCTGACTTC TTTATTCCGC AAGGAACGCA GGAAGAAATG 
CGCGCCGAAC TCGGCCTCGA TGCCGCCGGT ATGGAAGCCA AAATCAAGGC CTGGCTGGCA 
TAA 

 

Protein sequence

MSFDIAKYPT LALVDSTQEL RLLPKESLPK LCDELRRYLL DSVSRSSGHF ASGLGTVELT 
VALHYVYNTP FDQLIWDVGH QAYPHKILTG RRDKIGTIRQ KGGLHPFPWR GESEYDVLSV 
GHSSTSISAG IGIAVAAEKE GKNRRTVCVI GDGAITAGMA FEAMNHAGDI RPDMLVVLND 
NEMSISENVG ALNNHLAQLL SGKLYSSLRE GGKKVFSGVP PIKELLKRTE EHIKGMVVPG 
TLFEELGFNY IGPVDGHDVL GLITTLKNMR DLKGPQFLHI MTKKGRGYEP AEKDPITFHA 
VPKFDPSSGC LPKSSGGLPS YSKIFGDWLC ETAAKDNKLM AITPAMREGS GMVEFSRKFP 
DRYFDVAIAE QHAVTFAAGL AIGGYKPIVA IYSTFLQRAY DQVLHDVAIQ KLPVLFAIDR 
AGIVGADGQT HQGAFDLSYL RCIPEMVIMT PSDENECRQM LYTGYHYNDG PSAVRYPRGN 
AVGVELTPLE KLPIGKGIVK RRGEKLAILN FGTLMPEAAK VAESLNATLV DMRFVKPLDE 
ALILEMAASH EALVTVEENA IMGGAGSGVN EVLMAHRKPV PVLNIGLPDF FIPQGTQEEM 
RAELGLDAAG MEAKIKAWLA