| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E0335 |
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| Symbol | ribD |
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| ID | 6271440 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | + |
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| Start bp | 327629 |
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| End bp | 328732 |
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| Gene Length | 1104 bp |
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| Protein Length | 367 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 641724573 |
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| Product | bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase |
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| Protein accession | YP_001879123 |
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| Protein GI | 187734040 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
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| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 0.407254 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCAGGACG AGTATTACAT GGCGCGGGCG CTAAAGCTGG CGCAACGAGG ACGTTTTACC
ACCCACCCCA ACCCAAATGT CGGGTGCGTC ATTGTCAAAG ATGGCGAAAT TGTCGGTGAA
GGTTACCATC AACGAGCGGG TGAACCACAT GCCGAAGTAC ACGCGTTGCG TATGGCGGGT
GAAAAAGCCA AAGGTGCAAC GGCGTATGTG ACACTCGAAC CTTGCAGCCA TCACGGCCGT
ACGCCGCCTT GCTGTGATGC TTTAATTGCC GCAGGTGTGG CGCGCGTGGT TGCCTCGATG
CAAGATCCTA ACCCGCAGGT CGCTGGGCGT GGACTTTACC GTCTGCAACA GGCTGGCATT
GACGTCAGCC ACGGCCTGAT GATGAGTGAA GCCGAGCAAT TGAATAAAGG CTTTCTCAAG
CGGATGCGCA CCGGCTTTCC TTATATTCAG TTAAAACTTG GCGCATCGCT TGATGGTCGC
ACGGCGATGG CGAGCGGCGA AAGCCAGTGG ATCACTTCGC CCCAGGCGCG GCGTGATGTA
CAACGACTGC GCGCGCAAAG TCATGCCATT TTAACCAGCA GCGCCACGGT GCTGGCGGAT
GATCCTGCCT TAACGGTGCG TTGGTCCGAA CTGGATGAAC AAACTCAGGC GCTCTACCCG
CAACAAAATC TCCGCCAGCC GGTACGTATT GTGATTGATA GCCAAAATCG CGTGACGCCG
GAACATCACA TTGTGCAGCA GCCCGGCGAA ACCTGGTTCG CGCGTACGCA GGAAGATTCT
CGTGAGTGGC CGGAAACGGT GCGTACCTTG CTGATTCCAG AGCATAAAGG TCATCTGGAT
CTGGTTGTAC TGATGATGCA ACTGGGTAAA CAGCAGATTA ACAGCATCTG GGTGGAAGCG
GGGCCAACGC TCGCTGGCGC ATTGCTGCAG GCGGGTTTAG TCGATGAGCT GATTGTCTAT
ATCGCACCTA AACTATTAGG CAGCGACGCC CGTGGATTAT GCACCCTGCC AGGGCTTGAG
AAATTAGCCG ACGCCCCCCA ATTTAAATTC AAAGAGATAC GTCATGTAGG CCCGGATGTT
TGCCTGCATT TAGTGGGTGC ATGA
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| Protein sequence | MQDEYYMARA LKLAQRGRFT THPNPNVGCV IVKDGEIVGE GYHQRAGEPH AEVHALRMAG
EKAKGATAYV TLEPCSHHGR TPPCCDALIA AGVARVVASM QDPNPQVAGR GLYRLQQAGI
DVSHGLMMSE AEQLNKGFLK RMRTGFPYIQ LKLGASLDGR TAMASGESQW ITSPQARRDV
QRLRAQSHAI LTSSATVLAD DPALTVRWSE LDEQTQALYP QQNLRQPVRI VIDSQNRVTP
EHHIVQQPGE TWFARTQEDS REWPETVRTL LIPEHKGHLD LVVLMMQLGK QQINSIWVEA
GPTLAGALLQ AGLVDELIVY IAPKLLGSDA RGLCTLPGLE KLADAPQFKF KEIRHVGPDV
CLHLVGA
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