| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E0179 |
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| Symbol | ldcC1 |
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| ID | 6271378 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | + |
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| Start bp | 196556 |
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| End bp | 198697 |
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| Gene Length | 2142 bp |
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| Protein Length | 713 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 641724430 |
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| Product | lysine decarboxylase, constitutive |
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| Protein accession | YP_001878988 |
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| Protein GI | 187730772 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1982] Arginine/lysine/ornithine decarboxylases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 42 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACATCA TTGCCATTAT GGGACCGCAT GGCGTCTTTT ATAAAGATGA GCCCATCAAA
GAACTGGAGT CGGCGCTGGT GGCGCAAGGC TTTCAGATTA TCTGGCCACA AAACAGCGTT
GATTTGCTGA AATTTATCGA ACATAACCCT CGAATTTGCG GCGTGATTTT TGACTGGGAT
GAGTACAGTC TCGATTTATG CAGCGATATC AATCAACTTA ATGAATATCT CCCGCTTTAT
GCCTTCATCA ACACCCACTC GACGATGGAT GTCAGCGTGC AGGATATGCG GATGGCGCTC
TGGTTTTTTG AATATGCGCT GGGGCAGGCG GAAGATATCG CCATTCGTAT GCGTCAGTAC
ACCAACGAAT ATCTTGATAA CATTACGCCG CCGTTCACGA AAGCCTTGTT TACCTACGTT
AAAGAGCGGA AGTACACCTT TTGTACGCCG GGGCATATGG GCGGCACCGC ATATCAAAAA
AGCCCGGTTG GCTGCCTGTT TTATGATTTT TTCGGCGGGA ATACCCTCAA GGCTGATGTC
TCTATTTCGG TCACCGAGCT TGGTTCGTTG CTCGACCACA CCGGGCCACA CCTGGAAGCG
GAAGAGTACA TCGCGCGGAC TTTTGGCGCG GAACAGAGTT ATATCGTTAC CAACGGAACA
TCGACGTCGA ACAAAATTGT GGGTATGTAC GCCGCGCCAT CCGGCAGTAC GCTGTTGATC
GACCGCAATT GTCATAAATC GCTGGCGCAT CTGTTGATGA TGAACGATGT AGTGCCAGTC
TGGCTGAAAC CGACGCGTAA TGCGTTGGGG ATTCTTGGTG GGATCCCGCA CCGTGAATTT
ACTCGCGACA GCATCGAAGA GAAAGTCGCT GCCACCACGC AGGCACAATG GCCGGTTCAT
GCGGTGATTA CCAACTCCAC CTATGATGGC TTGCTCTACA ACACCGACTG GATCAAACAG
ACGCTGGATG TCCCGTCGAT CCACTTCGAT TCCGCCTGGG TGCCGTACAC CCATTTTCAT
CCGATCTACC AGGGGAAAAG TGGTATGAGC GGCGAGCGTG TTGCGGGAAA AGTGATCTTC
GAAACGCAAT CGACCCACAA AATGCTGGCG GCGTTATCGC AGGCTTCGCT GATCCACATT
AAAGGCGAGT ATGACGAAGA GGCGTTTAAC GAAGCCTTTA TGATGCATAC CACCACCTCG
CCCAGTTATC CCATTGTTGC TTCGGTTGAG ACGGCGGCGG CGATGCTGCG TGGTAATCCG
GGCAAACGGC TGATTAACCG TTCGGTGGAG CGGGCGCTGC ATTTTCGCAA AGAGGTCCAG
CGGTTGCGGG AAGAGTCTGA CGGTTGGTTT TTCGATATCT GGCAACCGCC GCAGGTGGAT
GAAGCCGAAT GCTGGCCCGT TGCGCCAGGC GAACAGTGGC ACGGCTTTAA CGATGCGGAT
GCCGATCATA TGTTTCTCGA TCCCGTTAAA GTCACTATTT TGACACCGGG GATGGACGAA
CAGGGCAATA TGAGCGAGGA GGGGATCCCG GCGGCGCTGG TGGCAAAATT CCTCGACGAA
CGTGGGATCG TAGTAGAGAA AACCGGCCCT TATAACCTGC TGTTTCTCTT TAGTATTGGT
ATCGATAAAA CCAAAGCAAT GGGATTATTG CGTGGGTTGA CGGAATTTAA ACACTCTTAC
GATCTCAACC TGCGGATCAA AAATATGCTA CCCGATCTCT ATGCTGAAGA TCCCGATTTC
TACCGCAATA TGCGTATTCA GGATCTGGCG CAAGGGATCC ATAAGCTGAT TCGTAAACAC
GATCTTCCCG GTTTGATGTT GTGGGCATTC GATACTTTGC CGGAAATGAT CATGACGCCA
CATCAGGCAT GGCAGAGACA GATTAAAGGT GAAGTAGAAA CCATTGCGCT GGAACAACTG
GTCGGTAGAG TATCGGCAAA TATGATCCTG CCTTATCCAC CGGGCGTACC GCTGTTGATG
CCAGGAGAAA TGCTGACCAA AGAGAGCCGC ACGGTACTCG ATTTTCTACT GATGCTTTGT
TCCGTAGGGC AACATTACCC CGGTTTTGAA ACGGATATTC ACGGCGCGAA ACAGGACGAA
GACGGCGTTT ACCGCGTACG AGTCCTAAAA ATGGCGGGAT AA
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| Protein sequence | MNIIAIMGPH GVFYKDEPIK ELESALVAQG FQIIWPQNSV DLLKFIEHNP RICGVIFDWD
EYSLDLCSDI NQLNEYLPLY AFINTHSTMD VSVQDMRMAL WFFEYALGQA EDIAIRMRQY
TNEYLDNITP PFTKALFTYV KERKYTFCTP GHMGGTAYQK SPVGCLFYDF FGGNTLKADV
SISVTELGSL LDHTGPHLEA EEYIARTFGA EQSYIVTNGT STSNKIVGMY AAPSGSTLLI
DRNCHKSLAH LLMMNDVVPV WLKPTRNALG ILGGIPHREF TRDSIEEKVA ATTQAQWPVH
AVITNSTYDG LLYNTDWIKQ TLDVPSIHFD SAWVPYTHFH PIYQGKSGMS GERVAGKVIF
ETQSTHKMLA ALSQASLIHI KGEYDEEAFN EAFMMHTTTS PSYPIVASVE TAAAMLRGNP
GKRLINRSVE RALHFRKEVQ RLREESDGWF FDIWQPPQVD EAECWPVAPG EQWHGFNDAD
ADHMFLDPVK VTILTPGMDE QGNMSEEGIP AALVAKFLDE RGIVVEKTGP YNLLFLFSIG
IDKTKAMGLL RGLTEFKHSY DLNLRIKNML PDLYAEDPDF YRNMRIQDLA QGIHKLIRKH
DLPGLMLWAF DTLPEMIMTP HQAWQRQIKG EVETIALEQL VGRVSANMIL PYPPGVPLLM
PGEMLTKESR TVLDFLLMLC SVGQHYPGFE TDIHGAKQDE DGVYRVRVLK MAG
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