| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E0147 |
|---|
| Symbol | clcA |
|---|
| ID | 6269964 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010658 |
|---|
| Strand | + |
|---|
| Start bp | 161988 |
|---|
| End bp | 163409 |
|---|
| Gene Length | 1422 bp |
|---|
| Protein Length | 473 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641724400 |
|---|
| Product | chloride channel protein |
|---|
| Protein accession | YP_001878959 |
|---|
| Protein GI | 187733888 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0038] Chloride channel protein EriC |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACTG ATACTCCCTC TTTAGAAACA CCGCAGGCCG CGCGCCTACG ACGCAGACAA
CTGATTCGCC AACTTCTTGA GCGCGATAAA ACTCCGTTAG CCATTTTGTT TATGGCGGCA
GTCGTCGGCA CGCTTGTCGG GCTGGCAGCG GTTGCTTTTG ACAAAGGTGT CGCCTGGTTG
CAGAACCAAC GTATGGGGGC GCTGGTACAT ACTGCTGATA ATTATCCGCT TCTGTTAACC
GTCGCTTTTC TCTGTTCGGC GGTGCTGGCG ATGTTCGGCT ACTTTTTGGT GCGCAAATAC
GCGCCGGAAG CAGGTGGTTC GGGGATCCCG GAAATTGAAG GGGCGCTGGA AGATCAACGT
CCCGTTCGCT GGTGGCGTGT GTTGCCGGTG AAATTCTTTG GCGGGCTGGG GACACTCGGC
GGAGGCATGG TGCTGGGGCG CGAAGGGCCA ACCGTGCAGA TCGGCGGCAA TATCGGTCGC
ATGGTACTCG ATATTTTCCG CCTGAAAGGT GATGAAGCTC GCCATACGCT GCTGGCAACC
GGTGCTGCTG CGGGGCTGGC TGCGGCCTTT AACGCGCCGC TGGCGGGTAT TTTGTTTATT
ATCGAAGAGA TGCGTCCGCA GTTTCGCTAT ACGTTAATTT CGATTAAAGC GGTATTTATT
GGCGTCATTA TGTCGACCAT TATGTACCGG ATTTTTAATC ATGAAGTTGC GTTGATTGAC
GTCGGTAAAC TTTCTGATGC GCCGCTTAAT ACGCAGTGGC TTTATCTGAT CCTCGGTATT
ATTTTTGGCA TTTTCGGCCC TATTTTTAAT AAATGGGTGC TGGGGATGCA GGATTTGCTG
CACCGTGTGC ACGGCGGCAA TATTACCAAA TGGGTGCTAA TGGGCGGTGC GATTGGCGGT
CTGTGTGGAT TGCTGGGGTT TGTGGCACCA GCAACGTCGG GCGGCGGTTT TAACCTGATT
CCTATCGCTA CCGCAGGGAA TTTCAGCATG GGAATGCTGG TGTTTATCTT CGTCGCGCGG
GTCATTACCA CCTTACTGTG CTTCTCTTCC GGCGCGCCGG GCGGTATTTT TGCCCCGATG
CTGGCGCTGG GTACTGTGCT GGGAACCGCT TTCGGAATGG TTGTCGTTGA GCTGTTTCCG
CAATATCACC TTGAGGCGGG GACTTTTGCT ATTGCCGGAA TGGGGGCGTT ACTGGCGGCA
TCTATTCGCG CGCCGTTAAC GGGGATCATT TTGGTTCTGG AGATGACCGA TAACTACCAG
CTCATTTTGC CAATGATTAT TACCGGTCTT GGCGCAACAC TATTAGCGCA ATTTACCGGC
GGGAAACCGC TATATTCGGC GATTCTTGCG CGCACGCTGG CAAAACAGGA AGCTGAGCAA
CTGGCGCGAA GCAAGGCCGC ATCAGCCAGC GAGAATACTT GA
|
|---|
| Protein sequence | MKTDTPSLET PQAARLRRRQ LIRQLLERDK TPLAILFMAA VVGTLVGLAA VAFDKGVAWL
QNQRMGALVH TADNYPLLLT VAFLCSAVLA MFGYFLVRKY APEAGGSGIP EIEGALEDQR
PVRWWRVLPV KFFGGLGTLG GGMVLGREGP TVQIGGNIGR MVLDIFRLKG DEARHTLLAT
GAAAGLAAAF NAPLAGILFI IEEMRPQFRY TLISIKAVFI GVIMSTIMYR IFNHEVALID
VGKLSDAPLN TQWLYLILGI IFGIFGPIFN KWVLGMQDLL HRVHGGNITK WVLMGGAIGG
LCGLLGFVAP ATSGGGFNLI PIATAGNFSM GMLVFIFVAR VITTLLCFSS GAPGGIFAPM
LALGTVLGTA FGMVVVELFP QYHLEAGTFA IAGMGALLAA SIRAPLTGII LVLEMTDNYQ
LILPMIITGL GATLLAQFTG GKPLYSAILA RTLAKQEAEQ LARSKAASAS ENT
|
|---|
| |