Gene SbBS512_E0138 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E0138 
SymbolligT 
ID6273210 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand- 
Start bp148571 
End bp149101 
Gene Length531 bp 
Protein Length176 aa 
Translation table11 
GC content56% 
IMG OID641724391 
Product2'-5' RNA ligase 
Protein accessionYP_001878950 
Protein GI187731852 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1514] 2'-5' RNA ligase 
TIGRFAM ID[TIGR02258] 2'-5' RNA ligase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.0169609 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTGAAC CGCAACGTCT GTTCTTTGCT ATCGACTTAC CTGCAGAAAT CCGCGAACAG 
ATTATCCACT GGCGCGCCAC ACACTTCCCA CCTGAGGCGG GACGTCCGGT CGCCGCCGAT 
AATTTGCATC TGACTCTGGC ATTTTTAGGC GAAGTGAGCG CCGAGAAAGA GAAGGCGCTT 
TCTCTTTTAG CCGGACGGAT TCGTCAACCT GGTTTCACAC TCACGCTTGA TGACGCCGGA 
CAATGGCTGC GTTCGCGTGT GGTGTGGTTA GGGATGCGTC AGCCGCCACG CGGCTTAATC 
CAGCTGGCGA ATATGCTCCG TTCACAGGCT GCCCGCAGCG GTTGTTTTCA AAGCAATCGT 
CCGTTTCATC CACATATTAC CTTATTGCGC GACGCCAGCG AGGCGGTGAC AATCCCGCCG 
CCAGGTTTTA ACTGGTCTTA TGCGGTGACG GAGTTCACCC TTTACGCCTC CTCGTTTGCC 
CGTGGACGCA CACGCTACAC GCCGCTAAAA CGCTGGGCGC TAATGCAATA A
 
Protein sequence
MSEPQRLFFA IDLPAEIREQ IIHWRATHFP PEAGRPVAAD NLHLTLAFLG EVSAEKEKAL 
SLLAGRIRQP GFTLTLDDAG QWLRSRVVWL GMRQPPRGLI QLANMLRSQA ARSGCFQSNR 
PFHPHITLLR DASEAVTIPP PGFNWSYAVT EFTLYASSFA RGRTRYTPLK RWALMQ