Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E0109 |
Symbol | lpdA |
ID | 6268369 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 119538 |
End bp | 120962 |
Gene Length | 1425 bp |
Protein Length | 474 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 641724365 |
Product | dihydrolipoamide dehydrogenase |
Protein accession | YP_001878924 |
Protein GI | 187733045 |
COG category | [C] Energy production and conversion |
COG ID | [COG1249] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes |
TIGRFAM ID | [TIGR01350] dihydrolipoamide dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 29 |
Plasmid unclonability p-value | 0.809196 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTACTG AAATCAAAAC TCAGGTCGTG GTACTTGGGG CAGGCCCCGC AGGTTACTCC GCTGCCTTCC GTTGCGCTGA TTTAGGTCTG GAAACCGTAA TCGTAGAACG TTACAACACC CTTGGCGGTG TTTGCCTGAA CGTCGGCTGT ATCCCTTCTA AAGCACTGCT GCACGTAGCA AAAGTTATCG AAGAAGCCAA AGCGCTGGCT GAACACGGTA TCGTCTTCGG CGAACCGAAA ACCGATATTG ACAAGATTCG TACCTGGAAA GAGAAAGTGA TCAATCAGCT GACCGGTGGT CTGGCTGGTA TGGCGAAAGG CCGCAAAGTC AAAGTGGTCA ACGGTCTGGG TAAATTTACC GGGGCTAACA CCCTGGAAGT TGAAGGTGAG AACGGTAAAA CCGTGATCAA CTTCGACAAC GCGATCATTG CAGCGGGTTC TCGCCCGATC CAACTGCCGT TTATTCCGCA TGAAGATCCG CGTATCTGGG ACTCCACTGA CGCGCTGGAA CTGAAAGAAG TACCAGAACG CCTGCTGGTA ATGGGTGGCG GTATCATCGG TCTGGAAATG GGCACCGTAT ACCACGCGCT GGGTTCACAG ATTGACGTGG TTGAAATGTT CGACCAGGTT ATCCCGGCAG CTGACAAAGA CATCGTTAAA GTCTTCACCA AGCGTATCAG CAAGAAATTC AACCTGATGT TGGAAACCAA AGTTACCGCC GTTGAAGCGA AAGAAGACGG TATTTATGTG ACGATGGAAG GCAAAAAAGC ACCCGCTGAA CCGCAGCGTT ACGACGCCGT GCTGGTAGCA ATTGGTCGTG TGCCGAACGG TAAAAACCTC GACGCAGGCA AAGCTGGCGT GGAAGTGGAC GACCGTGGTT TCATCCGCGT TGACAAACAG CTGCGTACCA ACGTACCGCA CATCTTTGCT ATCGGCGATA TCGTTGGTCA GCCGATGCTG GCACACAAAG GTGTTCACGA AGGTCACGTT GCCGCTGAAG TTATCGCCGG TAAAAAACAC TACTTCGATC CGAAAGTTAT CCCGTCTATC GCCTATACCG AACCAGAAGT TGCATGGGTA GGTCTGACTG AGAAAGAAGC GAAAGAGAAA GGCATCAGCT ATGAAACCGC CACCTTCCCG TGGGCTGCTT CTGGTCGTGC TATCGCTTCC GACTGCGCAG ACGGTATGAC CAAGCTGATT TTCGACAAAG AATCTCACCG TGTGATCGGT GGTGCGATTG TCGGTACCAA CGGCGGCGAG CTGCTGGGTG AAATCGGCTT GGCAATCGAA ATGGGTTGTG ACGCTGAAGA CATCGCGCTG ACCATCCATG CGCACCCGAC TCTGCACGAG TCTGTGGGCC TGGCGGCAGA AGTGTTCGAA GGTAGCATTA CCGACCTGCC GAACCCGAAA GCGAAGAAGA AGTAA
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Protein sequence | MSTEIKTQVV VLGAGPAGYS AAFRCADLGL ETVIVERYNT LGGVCLNVGC IPSKALLHVA KVIEEAKALA EHGIVFGEPK TDIDKIRTWK EKVINQLTGG LAGMAKGRKV KVVNGLGKFT GANTLEVEGE NGKTVINFDN AIIAAGSRPI QLPFIPHEDP RIWDSTDALE LKEVPERLLV MGGGIIGLEM GTVYHALGSQ IDVVEMFDQV IPAADKDIVK VFTKRISKKF NLMLETKVTA VEAKEDGIYV TMEGKKAPAE PQRYDAVLVA IGRVPNGKNL DAGKAGVEVD DRGFIRVDKQ LRTNVPHIFA IGDIVGQPML AHKGVHEGHV AAEVIAGKKH YFDPKVIPSI AYTEPEVAWV GLTEKEAKEK GISYETATFP WAASGRAIAS DCADGMTKLI FDKESHRVIG GAIVGTNGGE LLGEIGLAIE MGCDAEDIAL TIHAHPTLHE SVGLAAEVFE GSITDLPNPK AKKK
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