| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_E0098 |
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| Symbol | pilC |
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| ID | 6270048 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010658 |
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| Strand | - |
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| Start bp | 105382 |
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| End bp | 106584 |
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| Gene Length | 1203 bp |
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| Protein Length | 400 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 641724356 |
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| Product | type IV pilin biogenesis protein |
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| Protein accession | YP_001878915 |
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| Protein GI | 187732598 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1459] Type II secretory pathway, component PulF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.00354832 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCGAGTA AGCAACTCTG GCGCTGGCAT GGCATAACCG GCGACGGCAA TGCGCAAGAT
GGGATGCTAT GGGCAGAGAG CCGTGCTTTG CTGCTCATGG CACTACAGCA ACAGATGGTT
ACCCCACTTA GCCTGAAGCG AATCGCCATC AATTCTGCGC AGTGGCGAGG AGATAAAAGC
GCGGAAGTCA TTCATCAACT GGCGACGCTA CTCAAAGCCG GGTTAACGCT TTCTGAAGGG
CTGGCACTGC TGGCGGAACA GCATCCCAGT AAGCAATGGC AAGCGTTGCT GCAATCGCTG
GCGCACGATC TCGAACAGGG CATTGCTTTT TCCAATGCCT TATTACCCTG GTCAGAGGTA
TTTCCGCCAC TCTATCAGGC GATGATCCGC ACGGGTGAAC TGACCGGTAA GCTGGATGAA
TGCTGCTTTG AACTGGCGCG TCAGCAAAAA GCCCAGCGTC AGTTGACCGA CAAAGTGAAA
TCAGCGTTAC GTTATCCCAT CATCATTTTA GCGATGGCAA TCATGGTGGT TGTGGCAATG
CTGCATTTTG TTCTGCCGGA GTTTGCCGCT ATCTATAAGA CCTTCAACAC CCCACTACCG
GCACTAACGC AGGGGATCAT GACGCTGGCA GACTTTAGTG GCGAATGGAG CTGGCTGCTG
GTGTTGTTCG GCTTTCTGCT GGCGATAGCC AATAAGTTGC TGATGCGCCG ACCGACTTGG
CTTATAGTGC GGCAGAAATT GCTGTTACGC ATCCCGATTA TGGGTTCACT GATGCGGGGA
CAAAAACTCA CGCAGATCTT TACGATTCTG GCGCTGACAC AAAGTGCAGG CATTACTTTT
TTGCAGGGCG TAGAGAGCGT CAGAGAAACA ATGCGCTGCC CGTACTGGGT GCAACTTCTG
ACACAAATCC AGCACGATAT CAGTAACGGT CATCCCATCT GGCTGGCGCT AAAAAATACC
GGGGAGTTTA GCCCGCTCTG TTTGCAATTA GTGAGAACAG GAGAGGCATC CGGCTCGCTG
GACCTCATGT TAGACAACCT CGCCCATCAT CATCGGGATA ACACAATGGC GCTGGCGGAT
AACCTCGCAG CCTTACTGGA ACCGGCGTTG CTGATCATAA CGGGAGGAAT TATCGGTACG
CTGGTGGTGG CGATGTATCT GCCAATTTTC CATTTAGGCG ATGCGATGAG TGGGATGGGA
TAA
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| Protein sequence | MASKQLWRWH GITGDGNAQD GMLWAESRAL LLMALQQQMV TPLSLKRIAI NSAQWRGDKS
AEVIHQLATL LKAGLTLSEG LALLAEQHPS KQWQALLQSL AHDLEQGIAF SNALLPWSEV
FPPLYQAMIR TGELTGKLDE CCFELARQQK AQRQLTDKVK SALRYPIIIL AMAIMVVVAM
LHFVLPEFAA IYKTFNTPLP ALTQGIMTLA DFSGEWSWLL VLFGFLLAIA NKLLMRRPTW
LIVRQKLLLR IPIMGSLMRG QKLTQIFTIL ALTQSAGITF LQGVESVRET MRCPYWVQLL
TQIQHDISNG HPIWLALKNT GEFSPLCLQL VRTGEASGSL DLMLDNLAHH HRDNTMALAD
NLAALLEPAL LIITGGIIGT LVVAMYLPIF HLGDAMSGMG
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