Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E0092 |
Symbol | secA |
ID | 6273197 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 99248 |
End bp | 101953 |
Gene Length | 2706 bp |
Protein Length | 901 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 641724350 |
Product | preprotein translocase subunit SecA |
Protein accession | YP_001878909 |
Protein GI | 187731238 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG0653] Preprotein translocase subunit SecA (ATPase, RNA helicase) |
TIGRFAM ID | [TIGR00963] preprotein translocase, SecA subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00000405239 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCTAATCA AATTGTTAAC TAAAGTTTTC GGTAGTCGTA ACGATCGCAC CCTGCGCCGG ATGCGCAAAG TGGTCAACAT CATCAATGCC ATGGAACCGG AGATGGAAAA ACTCTCCGAC GAAGAACTGA AAGGGAAAAC CGCAGAGTTT CGTGCACGTC TGGAAAAAGG CGAAGTGCTG GAAAATCTGA TCCCGGAAGC TTTCGCCGTG GTACGTGAGG CAAGTAAGCG CGTCTTTGGT ATGCGTCACT TCGACGTTCA GTTACTCGGC GGTATGGTTC TTAACGAACG CTGCATCGCC GAAATGCGTA CCGGTGAAGG TAAAACCCTG ACCGCAACGC TGCCTGCTTA CCTGAACGCA CTAACCGGTA AAGGCGTGCA CGTAGTTACC GTCAACGACT ACCTGGCGCA ACGTGACGCC GAAAACAACC GTCCGCTGTT TGAATTCCTT GGCCTGACTG TCGGTATCAA CCTGCCGGGC ATGCCAGCAC CGGCAAAGCG CGAAGCTTAC GCAGCTGACA TCACTTACGG TACGAACAAC GAATACGGCT TTGACTACCT GCGCGACAAT ATGGCGTTCA GCCCTGAAGA ACGTGTACAG CGTAAACTGC ACTATGCGCT GGTGGACGAA GTGGACTCCA TCCTGATCGA TGAAGCGCGT ACACCGCTGA TCATTTCCGG CCCGGCAGAA GACAGCTCGG AAATGTATAA ACGCGTGAAT AAAATTATTC CGCACCTGAT CCGTCAGGAA AAAGAAGACT CCGAAACCTT CCAGGGCGAA GGCCACTTCT CGGTGGACGA AAAATCTCGC CAGGTGAACC TGACCGAACG TGGTCTGGTG CTGATTGAAG AACTGCTGGT GAAAGAGGGC ATCATGGATG AAGGGGAGTC TCTGTACTCT CCGGCCAACA TCATGCTGAT GCACCACGTA ACGGCGGCGC TGCGCGCTCA TGCGCTGTTT ACCCGCGACG TCGACTACAT CGTTAAAGAT GGTGAAGTTA TCATCGTTGA CGAACACACC GGTCGTACCA TGCAGGGCCG TCGCTGGTCC GATGGTCTGC ACCAGGCTGT GGAAGCGAAA GAAGGTGTGC AGATCCAGAA CGAAAACCAA ACGCTGGCTT CGATCACCTT CCAGAACTAC TTCCGTCTGT ATGAAAAACT GGCGGGGATG ACCGGTACTG CTGATACCGA AGCTTTCGAA TTTAGCTCCA TCTACAAGCT GGATACCGTC GTTGTTCCGA CCAACCGTCC AATGATTCGT AAAGATCTGC CGGACCTGGT CTACATGACT GAAGCGGAAA AAATTCAGGC GATCATTGAA GATATCAAAG AACGTACTGC GAAAGGCCAG CCGGTGCTGG TGGGTACTAT CTCCATCGAA AAATCGGAGC TGGTGTCAAA CGAACTGACC AAAGCCGGTA TTAAGCACAA CGTCCTGAAC GCCAAATTCC ACGCCAACGA AGCGGCGATT GTTGCTCAGG CAGGTTATCC GGCTGCGGTG ACTATCGCGA CCAATATGGC GGGTCGTGGT ACAGATATTG TGCTCGGTGG TAGCTGGCAG GCAGAAGTTG CCGCGCTGGA AAATCCGACC GCAGAGCAAA TTGAAAAAAT TAAAGCCGAC TGGCAGGTAC GTCACGATGC GGTACTGGAA GCAGGTGGCC TGCATATCAT CGGTACCGAG CGTCACGAAT CCCGTCGTAT CGATAACCAG TTGCGCGGTC GTTCTGGTCG TCAGGGGGAT GCTGGTTCTT CCCGTTTCTA CCTGTCGATG GAAGATGCGC TGATGCGTAT TTTTGCTTCC GACCGAGTAT CCGGCATGAT GCGTAAACTG GGTATGAAGC CAGGCGAAGC CATTGAACAC CCGTGGGTGA CTAAAGCGAT TGCCAACGCC CAGCGTAAAG TTGAAAGTCG TAACTTCGAC ATTCGTAAGC AACTGCTGGA ATATGATGAC GTGGCTAACG ATCAGCGTCG CGCCATTTAC TCCCAGCGTA ATGAACTGCT GGATGTCAGC GATGTGAGCG AAACCATCAA CAGCATTCGT GAAGATGTGT TCAAAGCCAC CATTGATGCC TACATTCCGC CACAGTCGCT GGAAGAAATG TGGGATATTC CGGGGCTGCA GGAACGTCTG AAGAACGATT TCGACCTCGA TTTACCAATT GCCGAGTGGC TGGATAAAGA ACCAGAACTG CATGAAGAGA CGCTGCGTGA GCGCATTCTG GCGCAGTCCA TCGAAGTGTA TCAGCGTAAA GAAGAAGTGG TTGGTGCTGA GATGATGCGT CACTTCGAGA AAGGCGTCAT GCTGCAAACG CTTGACTCCC TGTGGAAAGA GCACCTGGCA GCGATGGACT ATCTGCGTCA GGGTATCCAC CTGCGTGGCT ATGCACAGAA AGATCCGAAG CAGGAATACA AACGTGAATC GTTCTCCATG TTTGCAGCGA TGCTGGAGTC GTTGAAATAT GAAGTTATCA GTACGCTGAG CAAAGTTCAG GTACGTATGC CTGAAGAGGT TGAGGAGCTG GAACAACAGC GTCGTATGGA AGCCGAGCGT TTAGCGCAAA TGCAGCAGCT TAGCCATCAG GATGACGACT CTGCAGCCGC AGCTGCATTG GCGGCGCAAA CCGGTGAGCG CAAAGTAGGA CGTAACGATC CTTGCCCGTG CGGTTCTGGT AAAAAATACA AGCAGTGTCA TGGCCGCCTG CAATAA
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Protein sequence | MLIKLLTKVF GSRNDRTLRR MRKVVNIINA MEPEMEKLSD EELKGKTAEF RARLEKGEVL ENLIPEAFAV VREASKRVFG MRHFDVQLLG GMVLNERCIA EMRTGEGKTL TATLPAYLNA LTGKGVHVVT VNDYLAQRDA ENNRPLFEFL GLTVGINLPG MPAPAKREAY AADITYGTNN EYGFDYLRDN MAFSPEERVQ RKLHYALVDE VDSILIDEAR TPLIISGPAE DSSEMYKRVN KIIPHLIRQE KEDSETFQGE GHFSVDEKSR QVNLTERGLV LIEELLVKEG IMDEGESLYS PANIMLMHHV TAALRAHALF TRDVDYIVKD GEVIIVDEHT GRTMQGRRWS DGLHQAVEAK EGVQIQNENQ TLASITFQNY FRLYEKLAGM TGTADTEAFE FSSIYKLDTV VVPTNRPMIR KDLPDLVYMT EAEKIQAIIE DIKERTAKGQ PVLVGTISIE KSELVSNELT KAGIKHNVLN AKFHANEAAI VAQAGYPAAV TIATNMAGRG TDIVLGGSWQ AEVAALENPT AEQIEKIKAD WQVRHDAVLE AGGLHIIGTE RHESRRIDNQ LRGRSGRQGD AGSSRFYLSM EDALMRIFAS DRVSGMMRKL GMKPGEAIEH PWVTKAIANA QRKVESRNFD IRKQLLEYDD VANDQRRAIY SQRNELLDVS DVSETINSIR EDVFKATIDA YIPPQSLEEM WDIPGLQERL KNDFDLDLPI AEWLDKEPEL HEETLRERIL AQSIEVYQRK EEVVGAEMMR HFEKGVMLQT LDSLWKEHLA AMDYLRQGIH LRGYAQKDPK QEYKRESFSM FAAMLESLKY EVISTLSKVQ VRMPEEVEEL EQQRRMEAER LAQMQQLSHQ DDDSAAAAAL AAQTGERKVG RNDPCPCGSG KKYKQCHGRL Q
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