Gene SbBS512_E0033 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E0033 
SymbolispH 
ID6270783 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand+ 
Start bp29801 
End bp30751 
Gene Length951 bp 
Protein Length316 aa 
Translation table11 
GC content55% 
IMG OID641724293 
Product4-hydroxy-3-methylbut-2-enyl diphosphate reductase 
Protein accessionYP_001878853 
Protein GI187731568 
COG category[I] Lipid transport and metabolism
[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0761] Penicillin tolerance protein 
TIGRFAM ID[TIGR00216] (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value0.475447 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAGATCC TGTTGGCCAA CCCGCGTGGT TTTTGTGCCG GGGTAGACCG CGCTATCAGC 
ATTGTTGAAA ACGCGCTGGC CATTTACGGC GCACCGATAT ATGTCCGTCA CGAAGTGGTA 
CATAACCGCT ATGTGGTCGA TAGCTTGCGT GAGCGTGGGG CTATCTTTAT TGAGCAGATT 
AGCGAAGTAC CGGACGGCGC GATCCTGATT TTCTCCGCAC ACGGTGTTTC TCAGGCGGTA 
CGTAACGAAG CAAAAAGTCG CGATTTGACG GTATTTGACG CGACCTGTCC GCTGGTGACC 
AAAGTGCATA TGGAAGTCGC CCGCGCCAGT CGCCGTGGCG AAGAATCTAT TCTCATCGGT 
CACGCCGGGC ACCCGGAAGT GGAAGGGACA ATGGGCCAGT ACAGTAACCC GGAAGGGGGA 
ATGTATCTGG TCGAATCGCC GGACGATGTG TGGAAACTGA CGGTCAAAAA CGAAGAGAAG 
CTCTCCTTTA TGACCCAGAC CACGCTGTCG GTGGATGACA CGTCTGATGT GATCGACGCG 
CTGCGTAAAC GCTTCCCGAA AATTGTCGGT CCGCGCAAAG ATGACATCTG CTACGCCACG 
ACTAACCGTC AGGAAGCGGT ACGCGCCCTG GCAGAACAGG CGGAAGTTGT GTTGGTGGTC 
GGTTCGAAAA ACTCCTCCAA CTCCAACCGT CTGGCGGAGC TGGCCCAGCG TATGGGCAAA 
CGCGCGTTTT TGATTGACGA TGCGAAAGAC ATCCAGGAAG AGTGGGTGAA AGAGGTTAAA 
TGCGTCGGCG TGACTGCGGG CGCATCGGCT CCGGATATTC TGGTGCAGAA TGTGGTGGCA 
CGTTTGCAGC AGCTGGGCGG TGGTGAAGCC ATTCCGCTGG AAGGCCGTGA AGAAAACATT 
GTTTTCGAAG TGCCGAAAGA GCTGCGTGTC GATATTCGTG AAGTCGATTA A
 
Protein sequence
MQILLANPRG FCAGVDRAIS IVENALAIYG APIYVRHEVV HNRYVVDSLR ERGAIFIEQI 
SEVPDGAILI FSAHGVSQAV RNEAKSRDLT VFDATCPLVT KVHMEVARAS RRGEESILIG 
HAGHPEVEGT MGQYSNPEGG MYLVESPDDV WKLTVKNEEK LSFMTQTTLS VDDTSDVIDA 
LRKRFPKIVG PRKDDICYAT TNRQEAVRAL AEQAEVVLVV GSKNSSNSNR LAELAQRMGK 
RAFLIDDAKD IQEEWVKEVK CVGVTAGASA PDILVQNVVA RLQQLGGGEA IPLEGREENI 
VFEVPKELRV DIREVD