Gene SbBS512_E0020 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_E0020 
SymbolnhaR 
ID6273158 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010658 
Strand
Start bp19484 
End bp20383 
Gene Length900 bp 
Protein Length299 aa 
Translation table11 
GC content48% 
IMG OID641724280 
Producttranscriptional activator NhaR 
Protein accessionYP_001878840 
Protein GI187732489 
COG category[K] Transcription 
COG ID[COG0583] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value0.0536334 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCTCATA TCAATTACAA CCACTTGTAT TACTTCTGGC ATGTCTATAA AGAAGGTTCC 
GTGGTTGGCG CAGCGGAGGC GCTTTATTTA ACTCCACAAA CCATTACCGG ACAGATCCGG
GCTCTGGAAG AGCGCCTGCA AGGCAAATTA TTTAAGCGCA AGGGACGTGG TCTCGAACCC
AGCGAGCTGG GAGAACTGGT CTATCGCTAT GCCGATAAAA TGTTCACCTT AAGCCAGGAA
ATGCTGGATA TTGTGAACTA TCGCAAAGAA TCCAATTTAT TGTTTGACGT TGGCGTGGCT
GATGCACTTT CCAAACGCCT GGTCAGTAGC GTGCTGAATG CTGCAGTGGT AGAAGGCGAG
CCGATTCATC TTCGCTGCTT CGAATCCACC CACGAAATGC TACTGGAGCA ATTAAGCCAG
CATAAACTGG ATATGATCAT TTCCGACTGT CCGATAGACT CTACGCAGCA GGAAGGCCTG
TTCTCCGTGA GAATTGGCGA ATGTGGCGTG AGTTTCTGGT GTACAAATCC ACCACCAGAA
AAACCGTTCC CGGCTTGTCT GGAAGAACGG CGACTTTTGA TTCCTGGGCG ACGTTCAATG
TTAGGGCGCA AATTGCTTAA CTGGTTTAAC TCCCAGGGAT TAAACGTAGA AATCCTCGGC
GAGTTTGATG ATGCCGCGTT GATGAAAGCT TTTGGTGCAA TGCACAATGC AATCTTCGTT
GCCCCAACGC TTTATGCATA TGACTTTTAT GCCGATAAAA CTGTCGTAGA AATTGGTCGC
GTCGAGAATG TGATGGAAGA GTACCATGCT ATTTTTGCTG AGCGGATGAT TCAGCACCCG
GCGGTACAGC GAATCTGCAA TACGGATTAT TCTGCGCTTT TTAGTCCAGC GGCGCGTTAA
 
Protein sequence
MSHINYNHLY YFWHVYKEGS VVGAAEALYL TPQTITGQIR ALEERLQGKL FKRKGRGLEP 
SELGELVYRY ADKMFTLSQE MLDIVNYRKE SNLLFDVGVA DALSKRLVSS VLNAAVVEGE
PIHLRCFEST HEMLLEQLSQ HKLDMIISDC PIDSTQQEGL FSVRIGECGV SFWCTNPPPE
KPFPACLEER RLLIPGRRSM LGRKLLNWFN SQGLNVEILG EFDDAALMKA FGAMHNAIFV
APTLYAYDFY ADKTVVEIGR VENVMEEYHA IFAERMIQHP AVQRICNTDY SALFSPAAR