Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_E0020 |
Symbol | nhaR |
ID | 6273158 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010658 |
Strand | + |
Start bp | 19484 |
End bp | 20383 |
Gene Length | 900 bp |
Protein Length | 299 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 641724280 |
Product | transcriptional activator NhaR |
Protein accession | YP_001878840 |
Protein GI | 187732489 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 0.0536334 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTCTCATA TCAATTACAA CCACTTGTAT TACTTCTGGC ATGTCTATAA AGAAGGTTCC GTGGTTGGCG CAGCGGAGGC GCTTTATTTA ACTCCACAAA CCATTACCGG ACAGATCCGG GCTCTGGAAG AGCGCCTGCA AGGCAAATTA TTTAAGCGCA AGGGACGTGG TCTCGAACCC AGCGAGCTGG GAGAACTGGT CTATCGCTAT GCCGATAAAA TGTTCACCTT AAGCCAGGAA ATGCTGGATA TTGTGAACTA TCGCAAAGAA TCCAATTTAT TGTTTGACGT TGGCGTGGCT GATGCACTTT CCAAACGCCT GGTCAGTAGC GTGCTGAATG CTGCAGTGGT AGAAGGCGAG CCGATTCATC TTCGCTGCTT CGAATCCACC CACGAAATGC TACTGGAGCA ATTAAGCCAG CATAAACTGG ATATGATCAT TTCCGACTGT CCGATAGACT CTACGCAGCA GGAAGGCCTG TTCTCCGTGA GAATTGGCGA ATGTGGCGTG AGTTTCTGGT GTACAAATCC ACCACCAGAA AAACCGTTCC CGGCTTGTCT GGAAGAACGG CGACTTTTGA TTCCTGGGCG ACGTTCAATG TTAGGGCGCA AATTGCTTAA CTGGTTTAAC TCCCAGGGAT TAAACGTAGA AATCCTCGGC GAGTTTGATG ATGCCGCGTT GATGAAAGCT TTTGGTGCAA TGCACAATGC AATCTTCGTT GCCCCAACGC TTTATGCATA TGACTTTTAT GCCGATAAAA CTGTCGTAGA AATTGGTCGC GTCGAGAATG TGATGGAAGA GTACCATGCT ATTTTTGCTG AGCGGATGAT TCAGCACCCG GCGGTACAGC GAATCTGCAA TACGGATTAT TCTGCGCTTT TTAGTCCAGC GGCGCGTTAA
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Protein sequence | MSHINYNHLY YFWHVYKEGS VVGAAEALYL TPQTITGQIR ALEERLQGKL FKRKGRGLEP SELGELVYRY ADKMFTLSQE MLDIVNYRKE SNLLFDVGVA DALSKRLVSS VLNAAVVEGE PIHLRCFEST HEMLLEQLSQ HKLDMIISDC PIDSTQQEGL FSVRIGECGV SFWCTNPPPE KPFPACLEER RLLIPGRRSM LGRKLLNWFN SQGLNVEILG EFDDAALMKA FGAMHNAIFV APTLYAYDFY ADKTVVEIGR VENVMEEYHA IFAERMIQHP AVQRICNTDY SALFSPAAR
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