Gene SbBS512_E0019 details

Gene Information

• Locus tag: SbBS512_E0019
• Symbol: nhaA
• ID: 6270541
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shigella boydii CDC 3083-94
• Kingdom: Bacteria
• Replicon accession: NC_010658
• Strand: +
• Start bp: 18252
• End bp: 19418
• Gene Length: 1167 bp
• Protein Length: 388 aa
• Translation table: 11
• GC content: 52%
• IMG OID: 641724279
• Product: pH-dependent sodium/proton antiporter
• Protein accession: YP_001878839
• Protein GI: 187732952
• COG category: [P] Inorganic ion transport and metabolism
• COG ID: [COG3004] Na+/H+ antiporter
• TIGRFAM ID: [TIGR00773] Na+/H+ antiporter NhaA

Plasmid Coverage information

• Num covering plasmid clones: 22
• Plasmid unclonability p-value: 0.046286
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAAACATC TGCATCGATT CTTTAGCAGT GATGCCTCGG GAGGCATTAT TCTTATCATT 
GCCGCTATCC TGGCGATGAT GATGGCCAAC AGCGGCGCAA CCAGTGGATG GTATCACGAC 
TTTCTGGAGA CGCCGGTTCA GCTCCGGGTT GGTTCACTCG AAATCAACAA AAACATGCTG 
TTATGGATAA ATGACGCGCT GATGGCGGTA TTTTTCCTGT TAGTCGGTCT GGAAGTTAAA 
CGTGAACTGA TGCAAGGATC GCTAGCCAGC TTACGCCAGG CCGCATTTCC AGTTATCGCC 
GCTATTGGTG GGATGATTGT GCCGGCATTA CTCTATCTGG CCTTTAACTA TGCCGATCCG 
ATTACCCGCG AAGGGTGGGC GATCCCGGCG GCTACTGACA TTGCCTTTGC ACTTGGTGTG 
CTGGCGCTGT TGGGAAGTCG TGTTCCGTTA GCACTGAAGA TCTTTTTGAT GGCTCTGGCT 
ATTATCGACG ATCTTGGGGC CATCATTATC ATCGCATTGT TCTACACTAA TGACTTATCG 
ATGGCCTCTC TTGGCGTCGC GGCTGTAGCA ATTGCGGTAC TCGCGGTATT GAATCTGTGT 
GGTGTACGCC GCACGGGCGT CTATATTCTG GTTGGCGTAG TGTTGTGGAC TGCGGTGTTG 
AAATCGGGGG TTCACGCAAC CTTGGCGGGG GTAATTGTCG GCTTCTTTAT TCCTTTGAAA 
GAGAAGCATG GGCGTTCTCC AGCGAAGCGA CTGGAGCATG TGTTACACCC GTGGGTGGCG 
TATCTGATTT TGCCGCTGTT TGCATTTGCT AATGCTGGCG TTTCACTGCA AGGCGTCACG 
CTGGATGGCT TGACCTCCAT TCTGCCATTG GGGATCATCG CTGGCTTGCT GATTGGCAAA 
CCGCTGGGGA TTAGTCTGTT CTGCTGGTTG GCGCTGCGTT TGAAACTGGC GCATCTGCCT 
GAGGGAACGA CTTATCAGCA AATTATGGCG GTGGGGATCC TGTGCGGTAT CGGTTTTACT 
ATGTCTATCT TTATTGCCAG CTTGGCCTTT GGTAGCGTAG ATCCAGAACT GATTAACTGG 
GCGAAACTCG GTATCCTGGT CGGTTCTATC TCTTCGGCGG TAATTGGATA CAGCTGGTTA 
CGCGTTCGTT TGCGTCCATC AGTGTGA 

 

Protein sequence

MKHLHRFFSS DASGGIILII AAILAMMMAN SGATSGWYHD FLETPVQLRV GSLEINKNML 
LWINDALMAV FFLLVGLEVK RELMQGSLAS LRQAAFPVIA AIGGMIVPAL LYLAFNYADP 
ITREGWAIPA ATDIAFALGV LALLGSRVPL ALKIFLMALA IIDDLGAIII IALFYTNDLS 
MASLGVAAVA IAVLAVLNLC GVRRTGVYIL VGVVLWTAVL KSGVHATLAG VIVGFFIPLK 
EKHGRSPAKR LEHVLHPWVA YLILPLFAFA NAGVSLQGVT LDGLTSILPL GIIAGLLIGK 
PLGISLFCWL ALRLKLAHLP EGTTYQQIMA VGILCGIGFT MSIFIASLAF GSVDPELINW 
AKLGILVGSI SSAVIGYSWL RVRLRPSV