Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_0047 |
Symbol | |
ID | 6268359 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010657 |
Strand | + |
Start bp | 28637 |
End bp | 30499 |
Gene Length | 1863 bp |
Protein Length | 620 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 641724255 |
Product | TraG/TraD family protein |
Protein accession | YP_001878815 |
Protein GI | 187729997 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 157 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | GTGAAAACTT TTAATAAGTC GCAATCTGTT TTTATATTCG CTGTTATGCT TGTTGCGGCA TGGTTTGCAG GTTCATTTAT TTTCTTTGTG CTTTACTTCA GCCAGATAAA GAATCTGAAA CCATTGAAGG CTGTGTTCAG ATCCATTGAT GCGTACAGGA TGGATATTTT TACAGACAGC CTTACTTTAT CTGTTGTGAC TACGGATATC AGAGTTTTAG CCTTTGTTGC ACTTGGAGCA GGATTTGTCG TGTCTCTTAT CATCCCTGTT GCGGCGTTGA TAAAACTGAA CGAGAAGAAA GAAAATATTT TCGGTGATGC GCGATTTGCA ACAATTAATG ATATTCGTGA GTCTAACAGT TTCACGCTTG ACGGTGACGA AAAAGACGGG ATTATCGTTG GTATAAAAGA CAAGAAAATA ATACGCTATG TGGGAGCAGC ATTCAGTGCT ATGGGAGCCG GAACAAGGGC TGGTAAAGGT GCTGGTATAG TCATCACTAA TCTTATGAAG TACTGGTGGA GTGTTATTAT TCTCGATCCA AAAAGGGAGT GTTTTAATAT CACCAGTCTT ATCAGGAAGG TGATTTTAGG TCATGAGGTT TATAAATTTG ATCCCTTTAG TCCGGTAACG CACCGCTTTA ACCCTTTGTA TTATGTCAGC ATGGGAACGA GTGAAGGTTT TAACCAGCTT GAAAATCTTT CGTTGATTAT TTACCCCTAT AAGACAGATG GTGCGGATGC TGGTAGCTAT CTTAATAAGA CGGCGGGTGG TGTTTTTAAA TCTTATGCTG TCGCTTTATG GTTTATGATT AAGAATGATA AGGCTGGACT AAAAACGCTT GATATTGAGC CTGTCTTCTC AATGTCTAAA ATTAATCAGC TTTTTGAGCG TGCAGAACCC GAACATCTTC TTTCATTCAT GAATGATATT CGTTCAGAAT TAAGGGGGAA AGACAAAACG CTTGCTGATA TTGGTGTCGC TGGCCTTAAG GCATTCATTG AGATGGAGGA TAAAACAAAA GCACAACTCA AAAGCAACTT TCTTAATGGA TTATCACCGT TTGCTAACCC CAATGTGGCG AATGCTACTG ATGGAAATGA TTTTGATTTG CGGCAGGTGC GGAAAAAACG GATGACAATT TATTTCTGTA TTTCTGGTGA TAATGCCAGG TTGGCTGAAA AAATAACAAA TATTTTCTTT CAGCTTGGTA TACAGGTGAA TCTTGAAAAG ATGCCAACGG ATGATCCGGA AATAAAGCAT GACTGCCTTT TTCTACTGGA TGAATTCCCG TCAATTGGTG CTGTAGATTA CATCAAGAGT AAATCTGGTC TTATTGCTGG TTACAAGCTG AAATTGTTGA TTGTTTACCA GGTCGGCTCT CAGCTTGAGG AAATCTACAG TTATGCAGGC AGTAAAACAT TACTGGCAAG TGCACCCTGC AAAATCGTTT ATTCTGCTTC TGATGTTAAA GATGCACGGG AGTTATCAGA GGCGATGGGA ACACGAACAG TAACTATCGG TTCGAAAAGC AAAAGTCGTA GTCGTGGAGG AACATCGAGA TCTGAATCAG AAAACCTTAT TGAGCGTCCA CTGGTAACAA CAAATGAACT ACTGACACTG AAATTTAGTG AAGAAATCCT GGCAATGAAG GGAGAAAACC CGATTCGTTG TGAAAAGGCA TTCTACTATC TCCATGAGTA TTTCTTTGGT GATTTTGTGA AGGTTGCTCC GGAACTTGCA AATATTTTCC CCAGGAAGAA AGGAAAGCTG GTTATGCCTC CACAGAAAGT ATTTGAAAAT GAAATCGTCG CAAAAGGGTA TCTGGCAGTA AAAGATGTTC CTGATCTCGA TAAAGCGGCA TAA
|
Protein sequence | MKTFNKSQSV FIFAVMLVAA WFAGSFIFFV LYFSQIKNLK PLKAVFRSID AYRMDIFTDS LTLSVVTTDI RVLAFVALGA GFVVSLIIPV AALIKLNEKK ENIFGDARFA TINDIRESNS FTLDGDEKDG IIVGIKDKKI IRYVGAAFSA MGAGTRAGKG AGIVITNLMK YWWSVIILDP KRECFNITSL IRKVILGHEV YKFDPFSPVT HRFNPLYYVS MGTSEGFNQL ENLSLIIYPY KTDGADAGSY LNKTAGGVFK SYAVALWFMI KNDKAGLKTL DIEPVFSMSK INQLFERAEP EHLLSFMNDI RSELRGKDKT LADIGVAGLK AFIEMEDKTK AQLKSNFLNG LSPFANPNVA NATDGNDFDL RQVRKKRMTI YFCISGDNAR LAEKITNIFF QLGIQVNLEK MPTDDPEIKH DCLFLLDEFP SIGAVDYIKS KSGLIAGYKL KLLIVYQVGS QLEEIYSYAG SKTLLASAPC KIVYSASDVK DARELSEAMG TRTVTIGSKS KSRSRGGTSR SESENLIERP LVTTNELLTL KFSEEILAMK GENPIRCEKA FYYLHEYFFG DFVKVAPELA NIFPRKKGKL VMPPQKVFEN EIVAKGYLAV KDVPDLDKAA
|
| |