| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_0046 |
|---|
| Symbol | virB |
|---|
| ID | 6268332 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010657 |
|---|
| Strand | + |
|---|
| Start bp | 27622 |
|---|
| End bp | 28650 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 641724254 |
|---|
| Product | P-type DNA transfer ATPase VirB11 |
|---|
| Protein accession | YP_001878814 |
|---|
| Protein GI | 187729994 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0630] Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis |
|---|
| TIGRFAM ID | [TIGR02788] P-type DNA transfer ATPase VirB11 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 193 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGGCG TTATTCCTGT CAGCATTAGC AATAAATCGC TCGATTTTTA TAAAAATCAA
GTATTCCAGT CTTTTCTTGA TATTGAAGGG CTAACAGAAA TTGCTGTCAA CCGTCCTGGT
GAAATCTGGA CGGAAATTAA TGGTGACTGG ACATTCCATA ATAATGACAG TGTGACCTTT
GATTTTTGTA AACGTTTTTC TCAGACGCTG GCATCATTTC GGGGAGATGA AATCAGCGAT
ACCAAGCCAT TACTTTCAGC AACACTGGAA TCAGGAGAAC GTGTACAGGT CGTTTTTCCT
CCTGCATGTG AGAGAAATAC TATTTCAATC ACCATACGTA AACCATCGAC ACGGCAGATA
ACGCATAAAG AATATGTGGC GAACGGTTTT TATGATTATG TCCAGTCAGG AAAAAAACAC
AGGACATACG ATGATGAGCT TCTTGATTTA TTCAGAGCGA GAAATATCGC TGCTTTTATG
GAGCTTGCCG TAGCAGCAGG GAAAACCATT GTATTTGCCG GAGCAACGGG TTCCGGTAAA
ACAACATATA TGAAGAGTCT TATCGATTTC ATACCATTGA ATACACGGCT GATTACGATT
GAAGATGCAG AGGAAATCAA ATTTTTTATC CATAAAAATT ATGTGCATCT TTTTTACCCT
TCGGAATCCG GCAGTGATTC CGGCTCTATC ATAACAGCAG CGAAATTAAT CAAATCCTGT
TTGAGGATGA AACCTGACAG AATTTTACTG GCGGAAATTA AAGGTGGCGA TGCCTGGGAT
TTTGTGAAAG TTGCTGGTTC TGGTCACAGT GGAAGCATGA CGTCCATTCA CGCGGCCTCG
GCAAAAGATG CCATCATTCA GATGGTGACA AAATGTTATC AGAACAGAGA ATGTCAGAAT
CTTCCTTTTG ATGTTCTTCG TAAAATCATT ATGGACAGTA TTGATATTGT TGTTCATGTA
GGCAGGGATG GTGTTGTCAG GCATATGAGC GACATCTATT ACAAAGGGGC TGAATGTGAA
AACTTTTAA
|
|---|
| Protein sequence | MNGVIPVSIS NKSLDFYKNQ VFQSFLDIEG LTEIAVNRPG EIWTEINGDW TFHNNDSVTF
DFCKRFSQTL ASFRGDEISD TKPLLSATLE SGERVQVVFP PACERNTISI TIRKPSTRQI
THKEYVANGF YDYVQSGKKH RTYDDELLDL FRARNIAAFM ELAVAAGKTI VFAGATGSGK
TTYMKSLIDF IPLNTRLITI EDAEEIKFFI HKNYVHLFYP SESGSDSGSI ITAAKLIKSC
LRMKPDRILL AEIKGGDAWD FVKVAGSGHS GSMTSIHAAS AKDAIIQMVT KCYQNRECQN
LPFDVLRKII MDSIDIVVHV GRDGVVRHMS DIYYKGAECE NF
|
|---|
| |