Gene SbBS512_0044 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_0044 
SymbolvirB 
ID6268351 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010657 
Strand
Start bp25613 
End bp26518 
Gene Length906 bp 
Protein Length301 aa 
Translation table11 
GC content40% 
IMG OID641724252 
ProductP-type conjugative transfer protein VirB9 
Protein accessionYP_001878812 
Protein GI187729977 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3504] Type IV secretory pathway, VirB9 components 
TIGRFAM ID[TIGR02781] P-type conjugative transfer protein VirB9 


Plasmid Coverage information

Num covering plasmid clones179 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGAAAT TATTTATTGC TACATGTTTA TTGCTTCCTG GGCTTGTGTA TTCAGCAGCG 
ACTCCGTTAC CTTCTGGATT TGATGCAAGG ATGCAGACTG TGAGTTATAA CGGTGCGAAT
ACGACCGTTA TCCGGTCAAA GACAGGATTT CTCACATCAG TTGTTTTCGA TGAAGGTGAG
GCTGTTATCA GTGCAAAGGC TGGTTTTCCT GCCGGATGGG AAATCACAAC TGATGATAAT
GTTGTTTACA TCAATCCGCG TCCCGTTGTT CAGGAACAGG AAGGCGATGA AGGCGAAAAA
CTGAAAAAGG TTTTCCAGCC AACAGAAAAG GAATGGGATA CGAATCTTTT TGTCAGAACA
ACAAAGCGGA TTTACAGTCT GGATCTAATC CTTCTGTCAG AAGAAAAACA AGCGCAACCT
GCTTATGTTG TACAATTCCG CTATCCATCA GAAATAGCGA AAAAGAATGC AGAAGAAGTA
AGGCTGGCAA AAGAAAAACA GGAAAAACTC AGACAGAAGA AACTGATTTC TGAAAGTTTT
GAAAAAGCCG ATGCGCCTAA AAACTGGAAT TATTTCATGC GAGTCAATGA AAAATATGAC
AGCCGTCGTA TCGCCCCTGA TTTTGCTTAT GATAATGGTA TATTTACCTT TTTAGGTTTT
AACTCAGGGA AAGCATTCCC AGCTCCATTT GCTGTAAGAG ATGGTCAGGA ACAGACACTT
GCTTTTAATG TGGAAACAAA AGGCAAGTAT AAAATTATGG TTATCCACAA CGTTAATGAT
AAATTTGTTT TACGCTATGG AAACAGCGTT GTTGGTGTTG TGAATAAATC TTTCGGAAAA
GTATTAACCG ACCAGAGGAA TACATCTTCT CCTGCGGTAG AACGTGTTGA GGTGAATAAT
GACTGA
 
Protein sequence
MKKLFIATCL LLPGLVYSAA TPLPSGFDAR MQTVSYNGAN TTVIRSKTGF LTSVVFDEGE 
AVISAKAGFP AGWEITTDDN VVYINPRPVV QEQEGDEGEK LKKVFQPTEK EWDTNLFVRT
TKRIYSLDLI LLSEEKQAQP AYVVQFRYPS EIAKKNAEEV RLAKEKQEKL RQKKLISESF
EKADAPKNWN YFMRVNEKYD SRRIAPDFAY DNGIFTFLGF NSGKAFPAPF AVRDGQEQTL
AFNVETKGKY KIMVIHNVND KFVLRYGNSV VGVVNKSFGK VLTDQRNTSS PAVERVEVNN
D