Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SbBS512_0044 |
Symbol | virB |
ID | 6268351 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shigella boydii CDC 3083-94 |
Kingdom | Bacteria |
Replicon accession | NC_010657 |
Strand | + |
Start bp | 25613 |
End bp | 26518 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 40% |
IMG OID | 641724252 |
Product | P-type conjugative transfer protein VirB9 |
Protein accession | YP_001878812 |
Protein GI | 187729977 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3504] Type IV secretory pathway, VirB9 components |
TIGRFAM ID | [TIGR02781] P-type conjugative transfer protein VirB9 |
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Plasmid Coverage information |
Num covering plasmid clones | 179 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGAAAT TATTTATTGC TACATGTTTA TTGCTTCCTG GGCTTGTGTA TTCAGCAGCG ACTCCGTTAC CTTCTGGATT TGATGCAAGG ATGCAGACTG TGAGTTATAA CGGTGCGAAT ACGACCGTTA TCCGGTCAAA GACAGGATTT CTCACATCAG TTGTTTTCGA TGAAGGTGAG GCTGTTATCA GTGCAAAGGC TGGTTTTCCT GCCGGATGGG AAATCACAAC TGATGATAAT GTTGTTTACA TCAATCCGCG TCCCGTTGTT CAGGAACAGG AAGGCGATGA AGGCGAAAAA CTGAAAAAGG TTTTCCAGCC AACAGAAAAG GAATGGGATA CGAATCTTTT TGTCAGAACA ACAAAGCGGA TTTACAGTCT GGATCTAATC CTTCTGTCAG AAGAAAAACA AGCGCAACCT GCTTATGTTG TACAATTCCG CTATCCATCA GAAATAGCGA AAAAGAATGC AGAAGAAGTA AGGCTGGCAA AAGAAAAACA GGAAAAACTC AGACAGAAGA AACTGATTTC TGAAAGTTTT GAAAAAGCCG ATGCGCCTAA AAACTGGAAT TATTTCATGC GAGTCAATGA AAAATATGAC AGCCGTCGTA TCGCCCCTGA TTTTGCTTAT GATAATGGTA TATTTACCTT TTTAGGTTTT AACTCAGGGA AAGCATTCCC AGCTCCATTT GCTGTAAGAG ATGGTCAGGA ACAGACACTT GCTTTTAATG TGGAAACAAA AGGCAAGTAT AAAATTATGG TTATCCACAA CGTTAATGAT AAATTTGTTT TACGCTATGG AAACAGCGTT GTTGGTGTTG TGAATAAATC TTTCGGAAAA GTATTAACCG ACCAGAGGAA TACATCTTCT CCTGCGGTAG AACGTGTTGA GGTGAATAAT GACTGA
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Protein sequence | MKKLFIATCL LLPGLVYSAA TPLPSGFDAR MQTVSYNGAN TTVIRSKTGF LTSVVFDEGE AVISAKAGFP AGWEITTDDN VVYINPRPVV QEQEGDEGEK LKKVFQPTEK EWDTNLFVRT TKRIYSLDLI LLSEEKQAQP AYVVQFRYPS EIAKKNAEEV RLAKEKQEKL RQKKLISESF EKADAPKNWN YFMRVNEKYD SRRIAPDFAY DNGIFTFLGF NSGKAFPAPF AVRDGQEQTL AFNVETKGKY KIMVIHNVND KFVLRYGNSV VGVVNKSFGK VLTDQRNTSS PAVERVEVNN D
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