Gene SbBS512_0043 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSbBS512_0043 
Symbol 
ID6268318 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShigella boydii CDC 3083-94 
KingdomBacteria 
Replicon accessionNC_010657 
Strand+ 
Start bp24927 
End bp25613 
Gene Length687 bp 
Protein Length228 aa 
Translation table11 
GC content41% 
IMG OID641724251 
ProductTriG protein 
Protein accessionYP_001878811 
Protein GI187730008 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG3736] Type IV secretory pathway, component VirB8 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones188 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGAAA AAATCGAAAA GAAGATTGAG ACAGCTAAAT CCTTCGAAAG ACAACTCTAT 
GCAGAAAATG AACGGTCTAA GAAAAATGCA TGGCGTGTTG CAGTGGCAGC ATCATTACTG 
TCCTTATGTC TTGGGGCTGC AATTTGTGTT CTTGTGCCAT TAAAAGAAAA AGAGCTTGCT 
ATTGTGGCTG TTGGCGAAAA AACAGGCCGT ACAGAACTGA TTACTCAGGT TAAACAGGAA 
AAGATCCTGC AATCTGAAGC ACTAGGGCGG TATTTTGTAA ACACGTATAT TACCTTACGT 
GAAGGTTATA ATTATCCGTC TCTTCAGTAT GATTATGAGA CTGTACAGCT ATATAGTTCG 
AATACAGTAA AGGACGATTA TCTTCGTCTG TATAACAGCG ATATGGCTCC TGATAAAATT 
TATCATAATA ATGGTTCTTA CGTTGCGGTT GAGGTCATCT CCAATATTAT TTCTGACGCA 
ACCGCGCCAG ATAAACTGGC CTCTGTGCGC TTTAAAAAAA CGACGAGAAA CTTCACGACC 
GGACAGGTTT CAGTTTCATA CTGGACGGCT CGTGTGACAT ATCGTTTTGA ACCAGAAAAG 
TCGGTTAAAA GTTCCAGTCG TGAGCTTAAT CCTCTCGGTT TTACTGTAAC CAGTTACCAG 
ACAGATCGGG AAGCCAGGGG GGAATGA
 
Protein sequence
MSEKIEKKIE TAKSFERQLY AENERSKKNA WRVAVAASLL SLCLGAAICV LVPLKEKELA 
IVAVGEKTGR TELITQVKQE KILQSEALGR YFVNTYITLR EGYNYPSLQY DYETVQLYSS 
NTVKDDYLRL YNSDMAPDKI YHNNGSYVAV EVISNIISDA TAPDKLASVR FKKTTRNFTT 
GQVSVSYWTA RVTYRFEPEK SVKSSSRELN PLGFTVTSYQ TDREARGE