| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_0037 |
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| Symbol | |
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| ID | 6268366 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shigella boydii CDC 3083-94 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010657 |
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| Strand | + |
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| Start bp | 19831 |
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| End bp | 22578 |
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| Gene Length | 2748 bp |
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| Protein Length | 915 aa |
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| Translation table | 11 |
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| GC content | 40% |
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| IMG OID | 641724245 |
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| Product | triC protein |
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| Protein accession | YP_001878805 |
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| Protein GI | 187729971 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 126 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTACAC TTTATAAAGC GATGACACGC CCTGCTATGT ATGTGGGTGT TCCTGTCGTC
CCTCTTACTG TGGTTGCAGG GGCGTTATTT CTGGCGGGGG TTTATATCAG CAAGCTGATC
TGGCTGGCTA TTCCTGTCGC AGTTTTTATT CTCAGAATGA TAACTAAGCA GGACGACCAC
ATTTTTAATC TTTACTTTCT TAAGCTGAAA ATGCTCGGAA ACTCAGTGTG TAATCGTTTT
TTTGGCGCAC GAGCGTTCCT CTCCGGACAA TATGAAGCTG TTGAAATTGA TGAGTTTGTT
AATGCCATGA AACTGAATGA GCGAATCACT ACTGGTAAAT ATATACCCTA TTCAAGCCAT
GTTGATAAAA ATATTGTCAA AACAAAGAAC GGTGATTATG TAGCGACATG GCAACTGATG
GGGATTAACT TTGAGTCAAT CTCTGCGGAG ATGTTAGAAA CTATTGACTC ACAGGTTGCC
ACTCTTGTTC GTTCATTTTC CGGACTGCCC GTTTCATTTT ATAACCATTC ATGCAGGGCG
AGTTTTTATG ATGCCTTTAC CACAAAATCA GGTAATAAAT ATGCTGATAT AATATCAGAT
TGTTATTATG GTTCGATGAA GAAAAATAAA TTCAAGGGGA ACACTCTTTA CTTTACGCTG
ATCTACAGAC CAGACGGGCG TGTAGAAAAA CTGGAAAAAC GCAAAAAAAG TATTAAAGAA
AAGAAAGATG ATATTCACAT TCATGTGAAG AGAATGAATG AAATGATTAA TACATTCTCT
GGCGCTCTTG ATAAATTTAC CTGTAAACTT CTTGGTATGT ATGAGGAGAA CGGAAAGGTA
TTTTCTTCTC AACTGTCATT CTATAATTAT CTTCTGACAG GGAAGTTGCA AAAAATCAGA
GTCACTGATT CTCCGGTGTA TAACGTTCTT GGTGGAGTGG ATGTATTTTT TAATCATGAT
ACCGGACAGA TATGCCGCAT TGATGGAAAT AAATTCTTTC GTTCTATTGA AATTAAAGAT
TTCTGTAGTG AGACTGCATC CGGTGTTTTT GATGTGCTCC AGTATTCTGA TGCTGACTAT
ATTATTACGC ATTCATATAC ATCCATGAGC AAATCAGAAG CATTGAGTAC CATTAAACGT
GCGGAAAAAC AGTTAAAGAG TACAGAAGAT GATGCGGTCA CTCAATTGCA GGAACTGGAA
AAGGCAAAAA ATGATATTGT GTCCGGTGAT ATATCCTTTG GTTACTACCA TTTCACGATA
ATGGTAATGG CGGACAGTAT CAGGGAGCTT GACGAATCTG TAAGTAAAAT TACGGCAGAC
TTTACTGACC TGGGCATTAT TCCGGCATTG TCAACCATGT CATTGCCAGC GGCATATTTT
GCCCAACTTC CGGCGGTTTT TCATTTAAGG CCGCGTTTAT CTCCGGTATC GAATGTAAAT
TTTGTCGAAC TGGCATCATT CCATAATTTC TACCAGGGGA AACGCGATAA AAACTGCTGG
ACAGAAGCGG TTGCTATTCT CAAAACACCA AGCAAACAGG CGTATTATCT GAATTTACAT
AACTCAGTAC TGTTTAAAGA TGAAACAGGT GAAAAGAATC TTGCTAATAC TAAAGTTATA
GGAACGGCGG GTTCAGGTAA GACAATGTTT CTGTCATATC TTGCCTGTTC ATTACAGAAA
TACAATAACC CCGAAACTTT TGCTGATTCT GCAAAAAATA AGAAGTTAAC GTGTGTCTTT
CTTGATAAGG ACAGAGGGGC TGAATTATGT ATCCGAATGC TTGGGGGGGA ATATTACACC
GTAAAAAGCG GTGAGCCGAC AGGATGGAAT CCTTTTGCTC TGGAGGCAAC AAAACGTAAC
CGTATTTTTG TGAAGCAACT GATGGAGATT CTGTGTACCA GAAATGGTGA AAGATTATCG
ACAAGAGAAA GATTGCTTAT TAGCGAAAGT GTTGATGCTG TGATGGATTT TCCTCCTGGC
GAAATGCGGG AATATGGCAT TACCAGAATG CTTGAGCATC TTATGCAGAG AGATGATCGG
GATGAGCAGG AGAACGGGAT TATCCTTCGT TTGTCCCAAT GGGCTAATAG TCAGGCTCAT
GGCTGGGTTT TTGATAATGC TAAAGACACA TTCAATATTC AGCATGTCAA TAATTTTGGC
ATTGATGGCA CCGAGTTTCT TGATGATCCG ATGGTATGTG CACCAATTAC TTTCTATCTG
CTGTATCGCA TTACGCAGCT TCTGGACGGT CGGCGTCTTG TTATTTTCCT GGATGAGTTC
TGGAAATGGC TACAGGATGA AGCATTCAGC GATTTTGTCT ATAACAAGCT GAAAACAATT
CGTAAGCTGA ACGGGCTGGT TATTCCGGCA ACTCAGTCTC CGGATGAAAT ACTGAAGAAT
AAGATTTCAC GGGCTGTGGT TGAAGTATGC AGCACCAGTA TTTATCTGGC TAACCCTGAT
GCCGATTACA ATGATTATGT GGAAGGGCTT AAGCTGACAC CAGAAGAATT TAATATTATT
AAAAATCTTG ATCCAATGTC GAGACAGTTC CTGATTAAAA AAAGCAGTCT TAAAAAGGGG
GATGGTAAAT CATTTTCAGC ACTTGCGACA CTCGATTTAT CGGGACTTGG TGGATATCTG
AAAATATTGT CTGCCAGTGC AGATAATCTG GAAATTTTTG AAAGTATTTA TCATGAAGGA
ATGGAGCCTG ATGACTGGGT TCCTGAATAT CTCGAACGGG CAATCTGA
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| Protein sequence | MSTLYKAMTR PAMYVGVPVV PLTVVAGALF LAGVYISKLI WLAIPVAVFI LRMITKQDDH
IFNLYFLKLK MLGNSVCNRF FGARAFLSGQ YEAVEIDEFV NAMKLNERIT TGKYIPYSSH
VDKNIVKTKN GDYVATWQLM GINFESISAE MLETIDSQVA TLVRSFSGLP VSFYNHSCRA
SFYDAFTTKS GNKYADIISD CYYGSMKKNK FKGNTLYFTL IYRPDGRVEK LEKRKKSIKE
KKDDIHIHVK RMNEMINTFS GALDKFTCKL LGMYEENGKV FSSQLSFYNY LLTGKLQKIR
VTDSPVYNVL GGVDVFFNHD TGQICRIDGN KFFRSIEIKD FCSETASGVF DVLQYSDADY
IITHSYTSMS KSEALSTIKR AEKQLKSTED DAVTQLQELE KAKNDIVSGD ISFGYYHFTI
MVMADSIREL DESVSKITAD FTDLGIIPAL STMSLPAAYF AQLPAVFHLR PRLSPVSNVN
FVELASFHNF YQGKRDKNCW TEAVAILKTP SKQAYYLNLH NSVLFKDETG EKNLANTKVI
GTAGSGKTMF LSYLACSLQK YNNPETFADS AKNKKLTCVF LDKDRGAELC IRMLGGEYYT
VKSGEPTGWN PFALEATKRN RIFVKQLMEI LCTRNGERLS TRERLLISES VDAVMDFPPG
EMREYGITRM LEHLMQRDDR DEQENGIILR LSQWANSQAH GWVFDNAKDT FNIQHVNNFG
IDGTEFLDDP MVCAPITFYL LYRITQLLDG RRLVIFLDEF WKWLQDEAFS DFVYNKLKTI
RKLNGLVIPA TQSPDEILKN KISRAVVEVC STSIYLANPD ADYNDYVEGL KLTPEEFNII
KNLDPMSRQF LIKKSSLKKG DGKSFSALAT LDLSGLGGYL KILSASADNL EIFESIYHEG
MEPDDWVPEY LERAI
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