| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SbBS512_0003 |
|---|
| Symbol | |
|---|
| ID | 6268317 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shigella boydii CDC 3083-94 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010657 |
|---|
| Strand | + |
|---|
| Start bp | 738 |
|---|
| End bp | 2891 |
|---|
| Gene Length | 2154 bp |
|---|
| Protein Length | 717 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 641724211 |
|---|
| Product | DNA topoisomerase 3 |
|---|
| Protein accession | YP_001878771 |
|---|
| Protein GI | 187730005 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0550] Topoisomerase IA |
|---|
| TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 77 |
|---|
| Plasmid unclonability p-value | 0.0000970275 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGACTTT TTATCGCAGA AAAACCCGCA GTAGCAAATG ATATTGTTAA GGCACTTGGT
GGCAATTTTA CCCGCCATGA TGGCTGGTTT GAAAGTGATA ACGCCATTGT GACTAACTGT
TTTGGTCATA TTATCGAATC ACAACCGCCG GAAAACTATA ATCCTGAATA CAAAGCCTGG
AAGGTTGAAA CGCTTCCTTT ACGTCTTTAT CCCGTGAAGT ATCAGCCTGT TGAAAGTGCC
GCAAAACAGG TTAAAACGAT TCTCGAACTT ATCAGACGTG GAGACGTGAC TGAAATTGTT
CACGCTGGCG ATCCTGATGA TGAGGGACAG TTACTTGTTG ATGAAGTCCT GGAATATGCA
GGCAACACAA AACCCGTAAA GCGCGTTCTG ATTAACGACA ACACGCTTCC GGCAGTGAAA
AAGGCACTGG CAAATCTTAA AGATAATCGT GATTTCAAAG GGCTTTACCT TAAGGCGCTG
GCGCGTTCAG TTGCTGATGC CGTCTATGGC TTCTCCATGA CGCGTGCTTA CACCATTCCT
GCAAAAGCCA GAGGATATCA GGGCGTTCTG TCTGTCGGGC GCGTCCAGAC TCCCGTTCTT
GGCCTGATTG TGAATCGTAC CCGTGCTAAC CAGAACCATA AATCCAGTTT TTACTACACC
ATGACCGGAG TCTTTCAGCG TGGTGCTGAT GTTATCAGGG CGAACTGGAA GCCAGGGGAA
TTTGCTCCGC TGACAGACCG TAAATTACTT GATAAAGCGT GGGCAGACGG AACGGCAGCC
TCCCTTGCAG GAAAACCGGC TACAGTTGAA GCGGCAGCAA CTGATGATAA AAAAACGGCT
GCACCGTTGC CCTTTAACCT GGTACGACTC CAGCAATACA TGAACAAAAA GTTCAAAATG
ACGGCACAAA AAACGCTGGA TATTACGCAA CAATTACGTG AAAAATATAA AGCGATTACT
TATAACCGCT CTGATTGCTC ATATTTATCT GATGAACAAT TCAGCGAAGC GCCGCAGGTT
ATCGATGCCC TGAAATCAGT CTTTCCTCAG TCGCTGGATA TTGATTCTTC ACGTAAAAGC
AAAGCGTTTA ACAGTGCAAA GGTGACTGCG CATACTGCTA TAATCCCGAC CGCCAGTGTG
CCTGATGTTA ACGCACTCAG CACCGACGAG CGCAATGTTT ACCTGGCGAT CGCACAACAC
TATCTTGTTC AGTTCATGCC TGAAAAAGCA TACCAGGAAG TATCGGTTGC CATTCAGTGT
GGTGATGAGT CGTTCTATGC CCGTGCCAGA AAAACAACTG ACAGCGGATT TGAGGCGTTT
CTTGGCGCGG AAACCACAGA CGAAGGTGAA TCAGAAGATA ATGATGATTC CGCTTTTGAA
CTGCTCTGTA AAATTCGCAC AGGAGAAACA CTGACGACAA AAGAAGTTAT TGTTAATGAG
AAGAAAACAA CACCGCCGCC GTTATTCACC GAAGCCTCCT TGCTTGCTGC GCTTGTTCGT
GTCGCGGATT TTGTCACTGA CCCAACGATT AAAAAATTGT TGAAGGATAA GGATAAAGAC
AAAAAAGATG AACATGGTGG CATTGGTACG CCAGCTACCC GCGCAGCCAT TCTGGAAACG
CTGAAGAAAA GAAACTATAT CACGCTGGAA AAAGGGAAAC TTATTCCTAC TGATACCGGA
TATGCGCTTA TTGATGCCCT GCCTGGTATA GCGGTTAATC CTGATATGAC AGCATTATGG
TCTGAAAAGC AGGCTGCCAT AGAAAATGGC GATCTGACGG TTGAACAGTT TATTAATGAT
CTGTACGGTG AACTGACAGG CATGATTTCT GATGTTGACC TGGGCGAGAT GAAGATTGAA
CCCGCTGCGC CAGCAGGGCA GTTTCAACGC CTGGACTCTC CCTGCCCTTC CTGTGGTAAA
CATATTGTTA TCAGGCCGAA AGGTTATTTC TGTACCGGAT GTGAATTTAA AATCTGGAGT
GAGTTTTATG GTAAGAAAAT CACCCAAGCA CAGGCCGAAA AACTGGTTAA ATCAGGGAAA
ACCGATTTGA TTAAGGGATT TAAAAAGAAA AGTGGTGGAA CGTATGATAC AGTTCTTGTC
CTTGAGGATA AGAAAACAGG GAAACTGGGT TTTCCGGCAA GGGCTAAGAA GTGA
|
|---|
| Protein sequence | MRLFIAEKPA VANDIVKALG GNFTRHDGWF ESDNAIVTNC FGHIIESQPP ENYNPEYKAW
KVETLPLRLY PVKYQPVESA AKQVKTILEL IRRGDVTEIV HAGDPDDEGQ LLVDEVLEYA
GNTKPVKRVL INDNTLPAVK KALANLKDNR DFKGLYLKAL ARSVADAVYG FSMTRAYTIP
AKARGYQGVL SVGRVQTPVL GLIVNRTRAN QNHKSSFYYT MTGVFQRGAD VIRANWKPGE
FAPLTDRKLL DKAWADGTAA SLAGKPATVE AAATDDKKTA APLPFNLVRL QQYMNKKFKM
TAQKTLDITQ QLREKYKAIT YNRSDCSYLS DEQFSEAPQV IDALKSVFPQ SLDIDSSRKS
KAFNSAKVTA HTAIIPTASV PDVNALSTDE RNVYLAIAQH YLVQFMPEKA YQEVSVAIQC
GDESFYARAR KTTDSGFEAF LGAETTDEGE SEDNDDSAFE LLCKIRTGET LTTKEVIVNE
KKTTPPPLFT EASLLAALVR VADFVTDPTI KKLLKDKDKD KKDEHGGIGT PATRAAILET
LKKRNYITLE KGKLIPTDTG YALIDALPGI AVNPDMTALW SEKQAAIENG DLTVEQFIND
LYGELTGMIS DVDLGEMKIE PAAPAGQFQR LDSPCPSCGK HIVIRPKGYF CTGCEFKIWS
EFYGKKITQA QAEKLVKSGK TDLIKGFKKK SGGTYDTVLV LEDKKTGKLG FPARAKK
|
|---|
| |