| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_2041 |
|---|
| Symbol | |
|---|
| ID | 6273695 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 2480015 |
|---|
| End bp | 2481274 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642614102 |
|---|
| Product | efflux transporter, RND family, MFP subunit |
|---|
| Protein accession | YP_001878632 |
|---|
| Protein GI | 187736520 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0718692 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 41 |
|---|
| Fosmid unclonability p-value | 0.0182823 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTATAATA AGCCTTTGAC GTTTGCCGCA ACAACCCTGC TCCTTTGCTC CCCGGTGATG
ATATTAACTT CCTGCGAAGG GGAAAAGGAT TCCGCAGCCC AGGCGCCGGC GCTCGTTCCC
GAAGTGCAGG TGACCAAACT GGTCACGAAG GATGTTCCCA TCAGGCAGGA ATGGGTGGGC
ACCCTGCGCG GCACGGAAGA TGCCGAAATC CGCTCCCAGG TGACGGGATA CCTTCTTTCC
AAGGATTACC GGGACGGCGC TTATGTCAAG AAGGGCCAGG TGCTTTTCCA GATTGATCCC
CGCCCGTTCC AGGCAACGCT GGACCAGGCC CAGGGGAGAC TGGAACAATA TGAAGCCACG
CTGAAAAAAT ACAAGCTGGA CGTGGAACGC TATACCCCGC TGGTGAAAAC CGGCTCCGTC
AGCCGCAAGC AGCTGGACGA CGCCCTGCAG CAGGTCCAGG AAACGGAAGC CGCCATCGCC
ACGGCAAAGG CCCAGGTGGA TGAAGCAAAA ATCAATCTTA AATTCACCAC CATTACAGCC
CCCATTTCCG GCCTGGCCGG CCTGGCAACC CCTTCCATCG GCAACCTGCT GACGCCCTCC
AGCCCCACGC CGCTGACCAC CATTTCCTCC ATTGACCCCA TTCGGGTGGA TTTCTCCGTA
AGCGAACGGG ACTTCCTGAA CTCCATGGAC AATAATCTGA CCAGGCAGAA GCACCTCAAA
TTTGACGTGA TTCTTGCCAA CGGCACGGAA TATCCCATGC AGGGCGAACC CGTGGCCATT
GACAGGAATG TGGATGCCCA GACCGGTACC ATCAACATCG TCGGGCATAT TCCCAATCCG
AACCTGACGC TGCGGCCCGG CATGTTCGTC CGCGTCCGCG CCACGGTGAA AACGCTGGAA
AACGCCGCGC TGGTGCCTCC GCGCGCCATT CTGTCCGCCC AGAGCGCCAA ATTCATCATT
TACCTGGATG ACAAGAACAT TCCCCACATG CAGGTCGTCA ACCTCGGCCC CGTTGTTGAC
GGCATGCAGG TAATCAACAT CATTCCCATG CCGCACTCCA CCTTCACGAA GGACAGCCCC
ATCGTGGTGG AGGGAATCAT GCAGGCGGCC AAGGTGCAGG GACAAGCCCC CGTCAAGCCG
CTTCCCTACA AGCCCGTAGT TTCCCAGCCC GTCATGCCCT CCATAGGGGC CCAGTCCTTT
GAAAAGGCCA GGACGCCAGA AGGCATGAAG GATGGAGAAG CCCAGCCGTC CGCCAAGTAA
|
|---|
| Protein sequence | MYNKPLTFAA TTLLLCSPVM ILTSCEGEKD SAAQAPALVP EVQVTKLVTK DVPIRQEWVG
TLRGTEDAEI RSQVTGYLLS KDYRDGAYVK KGQVLFQIDP RPFQATLDQA QGRLEQYEAT
LKKYKLDVER YTPLVKTGSV SRKQLDDALQ QVQETEAAIA TAKAQVDEAK INLKFTTITA
PISGLAGLAT PSIGNLLTPS SPTPLTTISS IDPIRVDFSV SERDFLNSMD NNLTRQKHLK
FDVILANGTE YPMQGEPVAI DRNVDAQTGT INIVGHIPNP NLTLRPGMFV RVRATVKTLE
NAALVPPRAI LSAQSAKFII YLDDKNIPHM QVVNLGPVVD GMQVINIIPM PHSTFTKDSP
IVVEGIMQAA KVQGQAPVKP LPYKPVVSQP VMPSIGAQSF EKARTPEGMK DGEAQPSAK
|
|---|
| |