Gene Amuc_2012 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmuc_2012 
Symbol 
ID6275759 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAkkermansia muciniphila ATCC BAA-835 
KingdomBacteria 
Replicon accessionNC_010655 
Strand
Start bp2445146 
End bp2445589 
Gene Length444 bp 
Protein Length147 aa 
Translation table11 
GC content57% 
IMG OID642614071 
Producttranscriptional regulator, BadM/Rrf2 family 
Protein accessionYP_001878603 
Protein GI187736491 
COG category[K] Transcription 
COG ID[COG1959] Predicted transcriptional regulator 
TIGRFAM ID[TIGR00738] rrf2 family protein (putative transcriptional regulator) 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0939301 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones43 
Fosmid unclonability p-value0.0319849 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATGAAGG TTTCCACCAG AGGACGTTAC GCGCTGCGCC TGATGATTGA CCTCGCCCAG 
CACCGCGACG AGGGTTACAT CTCCCTGAAG GAGATTTCCG CCAGGCAGGA CGTTACCGTA
CGTTATCTGG AACAGATTAT CGCCATCCTT TTGAAAGCGG GATTCGTCCA GAGCTTCCGG
GGAAAGGCCG GCGGATACCG CCTTTCCAGG CATCCGCGCG AATATACTAC GGAAGATATC
CTGAAACTGA CGGAAGGCTC CCTCCTGCCC CTTTCCTGCA CGGCTTCCCA CGAGAATCCG
TGCCCGCGGG CGGCCGGCTG CGCCACGCTG CCTTTCTGGC GCGGGCTGCA ACAAGTCATT
GAGAATTATT TGCGTCGCGT AACGCTGGAA GATCTGGCCG AACAGCAGAA GGAAATCGGC
TGCGACTACG GAGCAGGTAT TTAA
 
Protein sequence
MMKVSTRGRY ALRLMIDLAQ HRDEGYISLK EISARQDVTV RYLEQIIAIL LKAGFVQSFR 
GKAGGYRLSR HPREYTTEDI LKLTEGSLLP LSCTASHENP CPRAAGCATL PFWRGLQQVI
ENYLRRVTLE DLAEQQKEIG CDYGAGI