| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_2004 |
|---|
| Symbol | |
|---|
| ID | 6274543 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 2435869 |
|---|
| End bp | 2436246 |
|---|
| Gene Length | 378 bp |
|---|
| Protein Length | 125 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 37% |
|---|
| IMG OID | 642614064 |
|---|
| Product | protein of unknown function DUF805 |
|---|
| Protein accession | YP_001878596 |
|---|
| Protein GI | 187736484 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3152] Predicted membrane protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 26 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 0.21194 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGGAATG CGAATAGAAA TTTATTTTTG AAAAAATATG TCAGTTTTTC CGGTCGTATT
TCCAGATCTG AATATTGGGT GCTAAAGTTG CTGATATTGC CAATGATGGC TAGTATTCTT
CTTTGTGGAG TTGTAATGAT GTGGAGTAAA ACAGGGAATG ATGCAGGAAT GTTGGTGTTG
ACAGTTATTA TTTTTATTTG TTTTATATAT TTCAATATTG TTGCGGATGT CCGAAGGCTT
CATGATATAG GAGAGAGCGG ATGGTGGGTG TTTTTAAAAC TGGTTCCTTT GGCCAACATT
GTTATTGCGG CGTTTCTTTT TTTTAAAGGT GGCCAAGCAG TTGGTAATCA ACATAGAGAC
TTAAGAGCTT CTCACTGA
|
|---|
| Protein sequence | MGNANRNLFL KKYVSFSGRI SRSEYWVLKL LILPMMASIL LCGVVMMWSK TGNDAGMLVL
TVIIFICFIY FNIVADVRRL HDIGESGWWV FLKLVPLANI VIAAFLFFKG GQAVGNQHRD
LRASH
|
|---|
| |