| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_2001 |
|---|
| Symbol | |
|---|
| ID | 6274550 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 2430986 |
|---|
| End bp | 2433025 |
|---|
| Gene Length | 2040 bp |
|---|
| Protein Length | 679 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642614061 |
|---|
| Product | putative lipoprotein |
|---|
| Protein accession | YP_001878593 |
|---|
| Protein GI | 187736481 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.629311 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 44 |
|---|
| Fosmid unclonability p-value | 0.117944 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTTGCG AGCGTCATTA TACGGCCCCC GTCAAGGGGG ATGGACAGTT TTTTTCCCTG
GGCCTGAGCG TTCCATGTCA CACAAAGGGG CTTTTTCCCG GGCATGGGAG GGGCCGGGCG
TTTTTCCTTG AAACAATTCC GGAAACTGAA CAGTATTATT TAACAAATAT GATTTTCTCA
CCATTGTTGA AAAAGGGGGT TCTTTTATTG GCCCTCTGCG GCGTGCTGGG CGGCGGCGTG
CTTTCCGCCC AGGAAGCAGG GGGTGCGCCG ATTACGGAGG AGGGTTTGAA AGCATTGGAT
TCCAATGTGT TCGCCAATGA ATACATGCTG GCGTTGAAGC CCAATGTCAC GCGCGACCGC
ATCGCCAGAA TCAAGGACCC CTTTGTGCGC GGGCTCGCCA CGCGGATGGC GGAGAAGAAA
TTTGACCGCA AGGCCCGCGC CCTTACGGCG GAACCGTATG AACCGGTCAA GGATCTGGCG
GAACGCCTGC GTACCAGCCA GTACAGCAAA TTTGAAAATC CCACCGGCAT CTTTTTTGAG
GAGGGGGAGG ACGTGTTGCT GGTCATGGGG GATCCCAAAG GTGAAAAGCT GAATCTGGTT
ATCCACAACT TCGGGCGGGA CGGAGGCCAC AGCTCCTATC CGCTGAAGGA GGGGGTCAAC
ATCATCAGGG CGAAGAACAA GGGGCTTGGC TACATTGAGT ATTTCACCCC CAATTATAAG
AAGGCTCCCA AGGTGCATTT ATCCATTTTG TCCGGCAAGG TGAACGGAGT TTTCGTGGGA
GGAGTCAGCA AAAACAGCGA CTGGAAGAAG ATGCTGGAAA ACTCCCCCAC GGAAGTTGTG
GACATCGTGG GCAGCCGCGT GCATCTGGTG TATCCGGTGG AGGAACTTAA ACAATTCTGT
CCGGACAAGG GGGAGGAGCT TATTGCCCTG TACGACAGGA TTATCGGCAT GGAGCAGCAG
ATCATGGGCT TGTACAAGTA CAGGATGCTG CCCAAAAACC GCATGTTCGG CCGTGTGATC
TGGAACGGGT TCATGCACGC GGACGGCACG GGGGCCGCCT TTCATAACGG CACCATGAAG
GAGGTCGGCA ATCCGGACAG GATTCCCGGC AGCGCCTGGG GGATTGCCCA TGAGTTCGGC
CACGTCAACC AGGTGCGCCC CGCCATGAAA TGGGTCTCCA CCGGAGAAGT GACCAATAAC
ATTTACTCCG CTTACGTGAA TTACATGCTG AATCCCTCCA GCATGCGCCT GGAGCATGAA
CGCATCAACG GCGGGGACGG CAACATGATT GGCGGACGCT TCAACGCCTA TCTGAACAAC
GGCATTTTGA AGGGGGAAAA CTGGCTTGTC CAGAGCGGGC CGGACAAGCG TTCCGGCGGG
GATAACCGTC CGATGGTGCA CGACCATTTT GTCAAGCTGG CCCCCCTGTG GCAGCTTGAG
CTGTATTTCA AGGTAGCCGG GAAGGGTAAT CCCGACTTTT ATCCGGATAT CTTTTATAAG
GCCATCAAGA TGGATACCAG GGGCAAGAAG GACGGCGAGC TCCAGCTTGC GTTCATGAAG
AACGCCTGCG ACGCCGCCAG ACAGGACCTG ACGGATTTTT TCCGGAAAAC GGGCATGCTC
AAGCCCATTG ACCAGGAATT GGACGACTAC ACCTGCGCCC GCATGACCAT CACGGAGGCC
GACTGCAAGA ACCTGATTGC CTACGCCAGG AAGTACAAAA AGCCGGAAAG CCCCGTCATT
TACTATATTT CCGTCAACAG CGCGGAAGCA TATAAGAACC GACTGCCTGT CCGCGGCGTT
TACAACCAGG GCGTTACGGA GCAGGGCAAC AGGCGCGTTG TTTCCCATGA CGTGTGGAAA
AACGCCGTCG TCTTTGAAAC ATACAAAGAC AGGGAAATGG TCCGCATCAC CATGGTGGGG
ACAGATTCCA GGGATAATTC CTCCACCACG GTTCCCTATC CGGAAGGTTC TACGCGGATT
GAAGCCGTTT CCTGGGACGG CAGGCGGACG CTGGTGTACG GCAAACGCCC TGCCAAATGA
|
|---|
| Protein sequence | MFCERHYTAP VKGDGQFFSL GLSVPCHTKG LFPGHGRGRA FFLETIPETE QYYLTNMIFS
PLLKKGVLLL ALCGVLGGGV LSAQEAGGAP ITEEGLKALD SNVFANEYML ALKPNVTRDR
IARIKDPFVR GLATRMAEKK FDRKARALTA EPYEPVKDLA ERLRTSQYSK FENPTGIFFE
EGEDVLLVMG DPKGEKLNLV IHNFGRDGGH SSYPLKEGVN IIRAKNKGLG YIEYFTPNYK
KAPKVHLSIL SGKVNGVFVG GVSKNSDWKK MLENSPTEVV DIVGSRVHLV YPVEELKQFC
PDKGEELIAL YDRIIGMEQQ IMGLYKYRML PKNRMFGRVI WNGFMHADGT GAAFHNGTMK
EVGNPDRIPG SAWGIAHEFG HVNQVRPAMK WVSTGEVTNN IYSAYVNYML NPSSMRLEHE
RINGGDGNMI GGRFNAYLNN GILKGENWLV QSGPDKRSGG DNRPMVHDHF VKLAPLWQLE
LYFKVAGKGN PDFYPDIFYK AIKMDTRGKK DGELQLAFMK NACDAARQDL TDFFRKTGML
KPIDQELDDY TCARMTITEA DCKNLIAYAR KYKKPESPVI YYISVNSAEA YKNRLPVRGV
YNQGVTEQGN RRVVSHDVWK NAVVFETYKD REMVRITMVG TDSRDNSSTT VPYPEGSTRI
EAVSWDGRRT LVYGKRPAK
|
|---|
| |