| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1964 |
|---|
| Symbol | |
|---|
| ID | 6274981 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 2383131 |
|---|
| End bp | 2384459 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642614026 |
|---|
| Product | Homoserine dehydrogenase |
|---|
| Protein accession | YP_001878558 |
|---|
| Protein GI | 187736446 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0460] Homoserine dehydrogenase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.052998 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 0.000903796 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGACGGAAA AACCTATACA ACTTGGGCTT GCCGGGCTGG GAACGGTCGG TTCCGGCGTT
TATGAAACGC TGTGCCGCAA TCACGCCCTT CTGGAAGCCC GGAGCAAGAT TCCTTTCAGG
CTCAAGCGCA TCGCCGTGCG CAACCTGGAA AAGCCCAGGG AAACCGTCGT TCCCCGGGAA
CTGCTGACGG ACGATTGGCA GGATTTGGTA AACGACCCGG AGATAGACAT CATTATTGAG
CTGATTGGCG GAACGCGCCA GGCTTACGAT CTGGTGACGC TGGCCCTCCG TGCCGGCAAG
CCCGTCGTTA CGGGGAACAA GGCTCTTCTG GCCGAATATG GAGCGGAGAT TTTCAAGCTT
TCCGCGGAAA TGGGCACCCC CATTTATTTC GAAGCGTCCG CCGGCGGCGG CATCCCCATT
ATCCAGAGCT TGCAGAATTC CCTGATTTGC AACCACATCA ATTCCATTGT GGGCATTATC
AACGGAACGT CCAACTATAT TCTCTCCGCC ATGGGGGAAC ACGGGGCCGA TTACGCGGAC
GCCCTGGCCC AGGCCCAGAA GCTGGGCTTC GCGGAAGAAG ACCCCTCCCT GGACGTCAAC
GGCTGGGACG CCGCCCATAA GGCGCTCATC CTGGCGATGC TGGCCTACGG AACAACCATT
TCCCCGGATA AAATTTACGT CAGAGGCATT GAGAATATCA CCAGCCGGGA TTTCGAATTT
GCCAAAAAAC TGGGCTATAC CATCAAGCTC CTTGTCGTCA TCCGCTACCA TGAGGGGCAG
GAAGACGCTC TGGAACTGCG TGTCCAGCCC TGTTTTGTCC ATGACTGGCA TATCCTGGCT
TCCGTGAACG GCGTGTTCAA CGCTATTTCC GTCAACGGGG ACATTGTGGG GGAAACGCTG
TTTTACGGCC GGGGAGCGGG CAAGAACCCC ACAGCTTCCG CCGTCATCAG CGACATCATC
ACCGCCATGC GCGAAAGCCG CTATCCGGAA TACCATACGG GCTTCAATCC CTATGCCAAG
GCCTGCGGGA TCATGCATAT CAATGATACG GTCACTCCGT ATTACGTCCG CTTCCAGGTA
GCGGACCAGC CGGGAGTCAT TGCGGAAATA GCCCGCATTC TGGCCACCTT CGGCATCGGC
ATTTCCGCCA CCTCTTCCGC TCCCAGCCAT ATTGATGAAG GCGGAGCCCC CTGGAACGAC
CTCGTTTTCA TCCTCCATTC CTGCCCGTGG GGCCAGCTCC AGAAGGCTCT GGAGGAAATA
ACCCGCATTT CCTGCGTGGC GGCGGAGCCC CGTGTCCTGC GCATAGAACA TCTTCTTCCT
CAATCCTAA
|
|---|
| Protein sequence | MTEKPIQLGL AGLGTVGSGV YETLCRNHAL LEARSKIPFR LKRIAVRNLE KPRETVVPRE
LLTDDWQDLV NDPEIDIIIE LIGGTRQAYD LVTLALRAGK PVVTGNKALL AEYGAEIFKL
SAEMGTPIYF EASAGGGIPI IQSLQNSLIC NHINSIVGII NGTSNYILSA MGEHGADYAD
ALAQAQKLGF AEEDPSLDVN GWDAAHKALI LAMLAYGTTI SPDKIYVRGI ENITSRDFEF
AKKLGYTIKL LVVIRYHEGQ EDALELRVQP CFVHDWHILA SVNGVFNAIS VNGDIVGETL
FYGRGAGKNP TASAVISDII TAMRESRYPE YHTGFNPYAK ACGIMHINDT VTPYYVRFQV
ADQPGVIAEI ARILATFGIG ISATSSAPSH IDEGGAPWND LVFILHSCPW GQLQKALEEI
TRISCVAAEP RVLRIEHLLP QS
|
|---|
| |