| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1962 |
|---|
| Symbol | |
|---|
| ID | 6275007 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 2381426 |
|---|
| End bp | 2382202 |
|---|
| Gene Length | 777 bp |
|---|
| Protein Length | 258 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 642614023 |
|---|
| Product | protein of unknown function DUF1212 |
|---|
| Protein accession | YP_001878556 |
|---|
| Protein GI | 187736444 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG2966] Uncharacterized conserved protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0150285 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 0.00184472 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCATA CCGACCAGAT ACAGGCCCTT TCGGAATTCC TGCTGGAATA CGCCACCACC
CTCATGGGCG CGGGGGTGCA CACCAACCGC GCCGTGCGCA ACATTTCCCG CATTGCCTCC
GCGTACGGAT ACAGCGCGGA CATGACCATT TTCCAGCGCA ATATCACCAT GAGCCTGATC
TGCAAGGATG ACGAGACGCT GCGCCGCACC TCCGTCCGGA AACTGAAACC CCTGGCGTTC
AACCTGAACC TGATCCAGCA GCTCAGTGAA TTGAGCTGGC TCCCGGTGGA CAACAACGTC
AGCATTGCGG AAATGGAACA GGCATTCCGC TCCATGGTGC GCACCAAAAG ATTTTCCCGC
TGGACGGACC TGCTCCTGGT CAGCGTAGGC AACGCCGCCT TCTGCCGCCT GTTTAACGGA
GACCTGTGGG CCATGCTGAC CGTGTTCGCC GCCACCATGC TGGGCTTTCT GGCCAAGCAG
CAGCTTACCC GGTTGAAATA CAACCCGCTG GGGGTCATCA TCCTTTCCGC CTTCACCGCT
TCCATGGCAG CCGCGTGCGC CGTCCTTTTC CAGATAGGCT CCACGCCGCA GATCGCCCTG
GCAGCCAGCG TCCTGTTCCT GGTGCCCGGC GTCCAGATGA TCAACTCCAT CATGGACCTG
ATGCACGGCC ACATCCTGAT GGGCATCTCC CGCGGCATCC ATTCCATCAT GATGATTGCC
TGCATCGCCA TCGGCCTCTC CGCAACCATG CTCATCGTAG GGGTAAACAG CTTATGA
|
|---|
| Protein sequence | MQHTDQIQAL SEFLLEYATT LMGAGVHTNR AVRNISRIAS AYGYSADMTI FQRNITMSLI
CKDDETLRRT SVRKLKPLAF NLNLIQQLSE LSWLPVDNNV SIAEMEQAFR SMVRTKRFSR
WTDLLLVSVG NAAFCRLFNG DLWAMLTVFA ATMLGFLAKQ QLTRLKYNPL GVIILSAFTA
SMAAACAVLF QIGSTPQIAL AASVLFLVPG VQMINSIMDL MHGHILMGIS RGIHSIMMIA
CIAIGLSATM LIVGVNSL
|
|---|
| |