| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1953 |
|---|
| Symbol | |
|---|
| ID | 6275098 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 2370908 |
|---|
| End bp | 2371399 |
|---|
| Gene Length | 492 bp |
|---|
| Protein Length | 163 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642614013 |
|---|
| Product | 5-nitroimidazole antibiotic resistance protein |
|---|
| Protein accession | YP_001878547 |
|---|
| Protein GI | 187736435 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG3467] Predicted flavin-nucleotide-binding protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.406915 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 43 |
|---|
| Fosmid unclonability p-value | 0.0305712 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAAGAA AAGACAGGGA AGTGACCCGG CACGGGGATT TGATGGAAAT GGTCGCCCGG
TTCAAGGTGT GCCGCCTGGG ACTGTGGGAC GGCAGGGAGG TGTATGTAGT TCCCCTCAAC
TTCGGATATG AAGAAAAAAA TGGTTCCCTG AGCCTGTTTT TCCACTGCGC CAGGGAAGGG
AGGAAGCTGG ATATCCTGCA AAACCGTCCG GAGGTTTCTT TTGAAATGGA TGGGGATCAT
GTGTTGCTGG AGGGGGATGT CCCGTGCCGG TACAGTTACG CCTACGGCTG CGTCATGGGG
CGTGGCGTCG TCGAATTTCT CCGGGAGGAT GAGGAAAAGA TGCATGCCTT GCGCCGCATC
ATGCTACACC AGACGGGCAG GGATGCGGAT TTTACCCCCG GCATGGTCCG TTCCGTATGT
GTTCTGCGTC TTAAGGTGGA GGCCGTCAGC GCCAAACTTC ATGCGTGCCC GGAACCTCCT
CCTTCCCGTT GA
|
|---|
| Protein sequence | MRRKDREVTR HGDLMEMVAR FKVCRLGLWD GREVYVVPLN FGYEEKNGSL SLFFHCAREG
RKLDILQNRP EVSFEMDGDH VLLEGDVPCR YSYAYGCVMG RGVVEFLRED EEKMHALRRI
MLHQTGRDAD FTPGMVRSVC VLRLKVEAVS AKLHACPEPP PSR
|
|---|
| |