Gene Amuc_1932 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmuc_1932 
Symbol 
ID6275260 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAkkermansia muciniphila ATCC BAA-835 
KingdomBacteria 
Replicon accessionNC_010655 
Strand
Start bp2344345 
End bp2345433 
Gene Length1089 bp 
Protein Length362 aa 
Translation table11 
GC content56% 
IMG OID642613992 
ProductEndoribonuclease L-PSP 
Protein accessionYP_001878526 
Protein GI187736414 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0251] Putative translation initiation inhibitor, yjgF family 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.375658 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value0.0845217 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACCTGCA ACTTGGAAAA AAACAAAGGT GTTTCCGTCA AGTCGCTCCC GCTGGGCGGC 
GAAGGCGCAT CTCTGCAATT CGTTACGCTT GCCGGAAGCG AACCTGGGCA GTTGGCCGAG
CATGCCGAAT TACTCCAAAA AGCTGAAAAA AGCGGTTTTC GGTGGATTGG CCCGGAAGTG
TACGGCAGCG CTGATCTGGA TCTCTCCCCG GTGCCCGGGG CGGGGATGAC TGCCTTTTTG
GGTACGAAAA CGGGCGCATC CTTCTATCGA GGCATGCAAA TTTGCGCGGT GGAGGGGATA
AATGCCCGGG CGATTGAGTT TAATGGCCGC ACCGCCGGGG TTTTTTATGA GGATGAATAT
GCCGAGTATG CCGTTTTGGG CGGTTTGTCG CCCCGCGACC GGACAGCCGG ACGGACTGAG
CAGACATTGG ATGTATTCCG GCAGATGGAA GAAGCGCTGA ACCGGGCCGG CATGGATTTT
TCCCACGTGG TCCGCACATG GTTTTACAAC AACCGCCTGC TGGACTGGTA TGAAGAGTTC
AACCGCGCCC GCGACACATT TTTTGAAAGC CGCGGCGTGT TTGATCGTCT GGTTCCGGCC
AGTACGGGGA TTGGTTCCGG CAATCGGGAA CATGCGGCCT TGTCGGCCCG CGTATTTGCC
ATTCGGCCTA AGGGCGACCG TGTGACGGTA AAAGATATCC CTTCGCCTCT GCAATGTTCA
GCTCAGGATT ACCGCAGCTC ATTCAGCCGT GCGATAGAAG TGGACCACCC TCTCTTCCGG
CAAGTCATCG TCTCCGGCAC GGCCAGCATT GCCCCTGGCG GCGAATCCGT ACATCTCGGC
GATATCGACA AACAAACAGA GCTCTCGCTG GACGTGATTG AAGCCATCCT GAAATCACGC
GGCATGGGCT GGAAGGATGT CGTCCGCTCC GTAGCCTATT TCAAAGACAA GGATTATGCC
CCTCACTACG AAAAAATAGC TCTGCGCCGC GGCCTCGCCA TCATGCCCTG CATCGGCATA
CAGGCCGATG TGTGCCGGGA CAATCTGTTG TTTGAAATGG AACTTGATGC AGCCGTGTTG
AAAGCCTGA
 
Protein sequence
MTCNLEKNKG VSVKSLPLGG EGASLQFVTL AGSEPGQLAE HAELLQKAEK SGFRWIGPEV 
YGSADLDLSP VPGAGMTAFL GTKTGASFYR GMQICAVEGI NARAIEFNGR TAGVFYEDEY
AEYAVLGGLS PRDRTAGRTE QTLDVFRQME EALNRAGMDF SHVVRTWFYN NRLLDWYEEF
NRARDTFFES RGVFDRLVPA STGIGSGNRE HAALSARVFA IRPKGDRVTV KDIPSPLQCS
AQDYRSSFSR AIEVDHPLFR QVIVSGTASI APGGESVHLG DIDKQTELSL DVIEAILKSR
GMGWKDVVRS VAYFKDKDYA PHYEKIALRR GLAIMPCIGI QADVCRDNLL FEMELDAAVL
KA