| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1887 |
|---|
| Symbol | |
|---|
| ID | 6275815 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 2291282 |
|---|
| End bp | 2293717 |
|---|
| Gene Length | 2436 bp |
|---|
| Protein Length | 811 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642613948 |
|---|
| Product | MscS Mechanosensitive ion channel |
|---|
| Protein accession | YP_001878482 |
|---|
| Protein GI | 187736370 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3264] Small-conductance mechanosensitive channel |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.723703 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 70 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCATCC CTGATTACCG GATCTTTTTC CGCCGCTGCG CCGCCTTTTT CCTGGCGGGG
GTTCTGGCCG CAGGTTCTGC ATCTGCACAG CAGGAGGCTC CGCCTGCCGC CGCCCCGGAA
CAGGCGGAGG AAGCCAAGGC GGAACAGCCT CAGGAGCAGC CGGACCAATC GGAAATGGAT
ACCGTAATCA TGGCTCTGTG CCATGAAATC ACCATTCTGA AAAAGAATGA GGAAAAAAGG
ATGGCCATCC GGAAAACGCT GGTGAGGGAA GCGGATGCTA CCTATAATTA TTTTGATACT
AGGGTGTATG AAATGTCCGC CGTGCTTTAC GCGCTGGACG ACCAAAAAAT ATTTACGCTG
GCTTTTTACT GTAAGGCCGC TTCCAGCCTG GTGAAGACGT ATTACGCCCA AAAACCGGAT
TTTCAGGGGC AGGAGGAACG GCTGGACAAG GAAATAGAAC GCATTAAAAA GCTGGCGGCA
TCCCTGGAGG AAGTAAATAC GGACACCCTG TCGCAAGCCT CCCTGGTTCA GCGGGACGAA
GCCCTGTATG CCTGCCAGGA GCTGGAAGAA TCCCTCCAAA GTGAAAAGGA GCAAATCAGC
TACCTCAAGG AACTTTTCAG CAGCCTGAAC GGCAAAATAG ACGCGCTCAA CAATGAAAGC
GCCAAACTGT TCACCGCCCT GTTTAACAGG GTCTTCTACA CGCCGTCCCA CGCGGCCCGG
TACATCTTTC TCAAACCGCA CAAGACGTAT GAAACGTGCA TGGGGGCATG GGAAACATCC
GCGGACAGCA AGCTCCAGCT TCCGTCAGAC CCGGAAACGC TCAAGCATTA CGGACTTATC
CTGCTGGGAA TCATCCTGTG CTCCTACTGC CTCTCCCGCA TCATCATCTT CCTGGGATTC
CGAAATACAT TGAAAAAGAC GGGGCATTAC AACAAACGCC ATGCTTTCGC CAACGTCACC
ACCATTCTTA TCGTGGCGCT GATCCTCGTC ATTGCCTCAC TGCGCACGCC GAACTACCTG
CTGGAGAGCG CGGCCTCCCT GGGCGCGGAA TTCCTTCTTC TGGTCAGCGC CATCCTGTTC
TCCCTGGTCA CGCGCCTTCC GTATGGCACC ATTAACTCCG GCATCCGCAT CTACATGCCC
TATCTGCTTC TGGGCGGATT CTTCATGCTT CTGCGCATGT TCATGGCCCC CAACATCATC
GTGGACATTT CCATGCCCAT CCTGTTCACG CTGGTTTCCC TCTTCTCCCT GCTGACCTGG
GTGCGGCAGA GGCACAAGCT GCCCCGGCTG GACCGTTTTT TCTCCACCGT ATCTCTGGTA
TTCACCATCC TGGGCAGCGT CCTGTGCTGG ACTGGATTCA GCTTCATGGC CTTCCTGGTG
CTGATGACCT GGATCATGCT GATGACCAGC ATCCTTCTGC TGGTGGGGCT GTGGGATCTG
CTCCACCATT ATGAAAACCG CCGGAAGGAA CGGAACAAGA GGGCCATCCT GTGGTTCCGC
CCCTTCATCT CCAAGCTGCT GCTTCCCTGC CTGACCATTT TCCTCATCCT GTTCAGCATC
ATCTGGCCCG CCGCCACCTT CGACATGGGG GACCTCATCA TTAATAAAAT TTTCGCAACC
ACGGAAATCA AGGATCTGCT CACTTTCAGC TGGAGCAGCG TCATCACGGT CATCCTGATG
GCCATTGTTC TCAACTACTT GATATTCTTG GGGAAAAATA CGCTGCATGA AATCTATGGA
GAAGATTATG AAGTAGGCAC CATCCCCACC TTCGTGACAC TCTCCACCCT TTTTCTCTGG
GGGCTCTTCG TTTTTACGGC GCTTATCATC ATGAACGCCA ACTACAACGG GCTGCTGATG
GTCATGGGAG GCTTGAGCAT GGGCATCGGC TTCGCCCTGA AAGATACCAT TGAAAACATC
ATCAGCGGCC TCTCCCTAAT GCTGGGTCGC CTGCGCCAGG GCGACATGAT TGAATGCGAC
GGCTACCGGG GCCGCGTCTC CTCCCTGGGC TACCGCTCCA CCATGATCGA GACGCTGGAC
GGCTCTATCA TCGCCTTCCA GAACTCCCAG CTTTTCAACA AGAACTTCCG CAACATGACC
CGCAACCACA AATTCGAATG CGTGAAGGTG GAAGTGGGCA TTTCCTACGG GACGGACGTG
GAAAGGGCGC GCAAAATCAT TCTGGAAACG CTGGCAACCC TGCCCTTCCT TTCCAAAGTC
AAGAAAACCA GCGTGGTGCT GGACAGTTTC GGAGACAGTG CCGTCAATCT GGGCGTATGG
GTCTGGGTTC CCGTCATGAC AAAGTCCTCC AGCCTTTCCT CCGTGCGGGA ACACATCTAT
AATGCGTTCA ACGAACACGG CATTTCCATC CCATTCCCTC AACAGGACTT GTACGTGAAA
GAATTCCTCG GCGGAGCCCC CGTCCAGGGG ACCTGA
|
|---|
| Protein sequence | MSIPDYRIFF RRCAAFFLAG VLAAGSASAQ QEAPPAAAPE QAEEAKAEQP QEQPDQSEMD
TVIMALCHEI TILKKNEEKR MAIRKTLVRE ADATYNYFDT RVYEMSAVLY ALDDQKIFTL
AFYCKAASSL VKTYYAQKPD FQGQEERLDK EIERIKKLAA SLEEVNTDTL SQASLVQRDE
ALYACQELEE SLQSEKEQIS YLKELFSSLN GKIDALNNES AKLFTALFNR VFYTPSHAAR
YIFLKPHKTY ETCMGAWETS ADSKLQLPSD PETLKHYGLI LLGIILCSYC LSRIIIFLGF
RNTLKKTGHY NKRHAFANVT TILIVALILV IASLRTPNYL LESAASLGAE FLLLVSAILF
SLVTRLPYGT INSGIRIYMP YLLLGGFFML LRMFMAPNII VDISMPILFT LVSLFSLLTW
VRQRHKLPRL DRFFSTVSLV FTILGSVLCW TGFSFMAFLV LMTWIMLMTS ILLLVGLWDL
LHHYENRRKE RNKRAILWFR PFISKLLLPC LTIFLILFSI IWPAATFDMG DLIINKIFAT
TEIKDLLTFS WSSVITVILM AIVLNYLIFL GKNTLHEIYG EDYEVGTIPT FVTLSTLFLW
GLFVFTALII MNANYNGLLM VMGGLSMGIG FALKDTIENI ISGLSLMLGR LRQGDMIECD
GYRGRVSSLG YRSTMIETLD GSIIAFQNSQ LFNKNFRNMT RNHKFECVKV EVGISYGTDV
ERARKIILET LATLPFLSKV KKTSVVLDSF GDSAVNLGVW VWVPVMTKSS SLSSVREHIY
NAFNEHGISI PFPQQDLYVK EFLGGAPVQG T
|
|---|
| |