Gene Amuc_1874 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmuc_1874 
Symbol 
ID6273706 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAkkermansia muciniphila ATCC BAA-835 
KingdomBacteria 
Replicon accessionNC_010655 
Strand+ 
Start bp2278834 
End bp2279496 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content59% 
IMG OID642613935 
Productcytochrome c class I 
Protein accessionYP_001878469 
Protein GI187736357 
COG category[C] Energy production and conversion 
COG ID[COG2010] Cytochrome c, mono- and diheme variants 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.0991365 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones56 
Fosmid unclonability p-value1 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAGGAG GCATCACGGC GGTAGCAGCC CTTGTTCTGC TGGGAGCACT CTGGTTCCTG 
GCAGGGGACG ACGATGGAAG AAATGCCGTT CCCCGTTTGT TTGACAATAT GAATGATCGT 
CCTCTGGCGG ATGCCCAGCA GGTGGGGATT TCTTCCGCCG CTCCGGACCG GAAAGCGCGC 
CTGACGCCTC CCCGTTCCGT GGCGCAGTCC CTGGGCATGA ACGGAACGGT CCGAAAACGG 
GAGGATGACC GGGACTCCTT TGCTGCGGAA GGTTCCTATT TTTCCTCCGG CCGCATGCAG 
GGCGGAGAGG AGGATTCCAT GCCTCTGGAA CTGGGCGGCA TCTCCCGCAG CCGCGACGTG 
CTGGCGGAGG GGCGCGCGCT TTATCTGGCG CATTGCGCCG TTTGCCACGG AGAGGACGGA 
AGCGGACGCG GAAGCATGGC CGCTTATGAC ACCTATCCGC AAATAGGCCC CTTCCGGGAT 
GAAAAATATG CTTCCTATTC TTCTGGAAAA ATGTTCAGGA GCATTCGGTT GGGGCAGGGG 
AACATGCCCG CTTTCGGAAA CATTCTCACG GCGCGGGAAA TCTGGTGTCT GGTGGCGTTT 
ATCCGCCATT TGCAAGCGCC GCCGGAAGAA CCTGCCGTTC AACAAAAGGA ACAACATTCA 
TGA
 
Protein sequence
MRGGITAVAA LVLLGALWFL AGDDDGRNAV PRLFDNMNDR PLADAQQVGI SSAAPDRKAR 
LTPPRSVAQS LGMNGTVRKR EDDRDSFAAE GSYFSSGRMQ GGEEDSMPLE LGGISRSRDV 
LAEGRALYLA HCAVCHGEDG SGRGSMAAYD TYPQIGPFRD EKYASYSSGK MFRSIRLGQG 
NMPAFGNILT AREIWCLVAF IRHLQAPPEE PAVQQKEQHS