| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1842 |
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| Symbol | |
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| ID | 6275474 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Akkermansia muciniphila ATCC BAA-835 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010655 |
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| Strand | + |
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| Start bp | 2239178 |
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| End bp | 2239792 |
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| Gene Length | 615 bp |
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| Protein Length | 204 aa |
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| Translation table | 11 |
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| GC content | 53% |
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| IMG OID | 642613905 |
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| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_001878440 |
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| Protein GI | 187736328 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.603651 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 68 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTGATG AAGGAACCGA ATGTACGGAT GCAGAAATGA ATACGCCGGC TTACGTCAGG
AATGAGGAGG TTGATGAAGA AAGCAGCCAT TTGCTGAGTT GGGATGAGTG GCTGCGGGAA
CATGCTTCCC AGCTGCTTCT GTTTGCACGC CAGCAGTCCC GCTCACCGGA AGATGCGGAG
GATATACTTC AGGATGCCCT GGTGCGTTTG GCTCGCAAGG AGGCTTCCGG GGAATTTGTG
GGAGGGCAGG AGGCGTGGCT TTCCTATGTC TTTGCCTCCA TCCGGCGTCT GGCGGTGGAT
TATGGCCGCA AATCCGACCG CCGCCAGAAA AGGGAGGATG AAGCCTGCGC CTCTGAACGG
GACGAAGATG TTTATATGGA CCCCTGGTTT TCCAGTGCTG CGGCAGATGA GGAACTCAAA
CAGTTCATGG AAATGCAGCT CAGGAAGCTC CCTTCCAAAT TCTCCGAGGT CATTGTCTTG
AAAATATGGG GGGAACAAAC TTTTCAGCAA ATTGCGGAAA CGCTGGAAAT CTCGCAGAAT
ACGGCGGCGA GCCGGTACCG TTACGGTATT GACTTGCTCC GCAGGGCTTT GAGAAATAAA
AAGAATCAAT TCTAA
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| Protein sequence | MADEGTECTD AEMNTPAYVR NEEVDEESSH LLSWDEWLRE HASQLLLFAR QQSRSPEDAE
DILQDALVRL ARKEASGEFV GGQEAWLSYV FASIRRLAVD YGRKSDRRQK REDEACASER
DEDVYMDPWF SSAAADEELK QFMEMQLRKL PSKFSEVIVL KIWGEQTFQQ IAETLEISQN
TAASRYRYGI DLLRRALRNK KNQF
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