| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1682 |
|---|
| Symbol | |
|---|
| ID | 6274533 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 2039754 |
|---|
| End bp | 2040746 |
|---|
| Gene Length | 993 bp |
|---|
| Protein Length | 330 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642613741 |
|---|
| Product | cobalamin biosynthesis protein CobD |
|---|
| Protein accession | YP_001878281 |
|---|
| Protein GI | 187736169 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1270] Cobalamin biosynthesis protein CobD/CbiB |
|---|
| TIGRFAM ID | [TIGR00380] cobalamin biosynthesis protein CobD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 63 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTCCCGT GCCCGTTCAT CCTGCCTGCG GCCTTCCTGC TGGATATTCT GGCGGGAGAA
CCGCCCAACA GGTTTCATCC CGTCTGTCTG ATCGGCCGGT GCGCGCTCCG CATGGAAACA
CTGGCGAGGC AAAGGTGGGG AGGAACTTTT CATGCGGGAA TGGCGGCCGC GCTGGCAACC
TGCATTGCCG CATGGTTCGG CTGCGCGGCG CTCTTCCTTC CCTTTTCCCT GTTACCCTCC
CCCTGGGCAC CCTGGATTCC GTCCGTTCTG GTCATTTACA TCTGCATGGC CCCGCGCAGC
CTGGCCGAGC ATGCCCGGAA GGTGGAAAAC GCCCTGCGCA GCGGGAACGC CGGAGAGGCC
CGGCACTCCG TCTCCATGAT CGTGGGACGG GATACGGAAC GGATGGACGT CTACGGCATC
GCCAGAGCGG CCATTGAAAG CGTGGCGGAG AACTTGACGG ATGGCGTTTT TTCCACCCTG
TTCTGGGCCT CAGCAGGCTG CCTGGCAGGA GGTGCCTCCG GGGCGGCTTC CGCCGCGCTG
GCGCATCGTG TTTTCAACAT CCTGGATGCC ATGTGGGGGA AAAAAAATGA CCGGTACAGA
CACTTCGGCA CCTTTGCCGC ACGCACGGAT GACGCGCTCA ACTTCATCCC CGCACGCCTT
ATTTTACCGT GTATTTCCTT TTCCGCCCTG ATGGTGGAAG GAACCTCCGC CCGGAGGGCG
CTCACCATGG GATGGGCCTT CCGGAACGCC CACGCCAGCC CCAATTCCGC ATGGAGCGAA
GCGGCCTTCG CTGGAGCGCT GGGCCTCCGT CTCGGGGGCC CGGTCTCTTA CAAGGGAATT
CCTGCAAACT ACCCCTGGAT AGGAACAGGG CGAACCAAAG CCTCCGCCAG CGACCTGGCC
CTGGCCATTC GGCTCATGTG GACGACTGCC GCCACGGGTA CGCTGGCGTT CACTCTCCTT
CTTCTCTTCA CCCCCCACTT CTGGACATCA TGA
|
|---|
| Protein sequence | MFPCPFILPA AFLLDILAGE PPNRFHPVCL IGRCALRMET LARQRWGGTF HAGMAAALAT
CIAAWFGCAA LFLPFSLLPS PWAPWIPSVL VIYICMAPRS LAEHARKVEN ALRSGNAGEA
RHSVSMIVGR DTERMDVYGI ARAAIESVAE NLTDGVFSTL FWASAGCLAG GASGAASAAL
AHRVFNILDA MWGKKNDRYR HFGTFAARTD DALNFIPARL ILPCISFSAL MVEGTSARRA
LTMGWAFRNA HASPNSAWSE AAFAGALGLR LGGPVSYKGI PANYPWIGTG RTKASASDLA
LAIRLMWTTA ATGTLAFTLL LLFTPHFWTS
|
|---|
| |