Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amuc_1666 |
Symbol | |
ID | 6275704 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Akkermansia muciniphila ATCC BAA-835 |
Kingdom | Bacteria |
Replicon accession | NC_010655 |
Strand | + |
Start bp | 2013730 |
End bp | 2017599 |
Gene Length | 3870 bp |
Protein Length | 1289 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 642613724 |
Product | glycoside hydrolase family 2 TIM barrel |
Protein accession | YP_001878265 |
Protein GI | 187736153 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3250] Beta-galactosidase/beta-glucuronidase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 0.114513 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAAGACGG TACGCGCGTT TCTGTTTTCC GTGATGTGTC TGGCTCCGGC TCTTCCCCTG CTGGGGGATG TTCCGGATTG GGAAAATGAA GAGGTGACGG GAATCAATAA GGAGGCTCCC CGAGCCTCCG TTTTTCCGGC ATCGGATAAA ACGTTGAGCT TGAACGGGGA TTGGAAGTTC AAATTTTCCA TGACTCCGGA CGAGAGGCCT GCCGATTTCT TCAATCCCTC TTATTCCGTT TCCGGATGGG ATACGGTCAA GGTTCCTTCC AACTGGCAGC TTTACGGTTA TGGAACGGCC ATTTACACGA ATGTTCCCTA TCCATTCAAG CCGAATCCTC CCAAGGTAAT GGGGGAACCG CCCAAGAACT GGCCGGCGTA CAGGGAGCGT AATTCCGTGG GTTCCTACCG CCGGGATTTC AATTTGCCCG TTTCCTGGAA GGGAGAGCAG GTGATGATCC GGTTTGACGG GGTGGAGTCC GCCTTTTATG TGTGGGTAAA TGGCCGTCAA GTCGGCTATT CCGAAGATTC CTATACAGGG GCGGAGTTTG ACCTTACTCC CTATGTCAGG CCCGGCAGGA ATACGATTGC CGTGGAAGTA TACCGCTGGA GCGACGGTTC TTACCTGGAG GACCAGGATT TCCTGCGCCT TTCCGGCATT TTCCGGGACG TGACCCTGTT TGCCCAGCCG CAGACGCACG TGCGTGACCT GTTCCTGAAG GCCGGACTGG ACAGGGAGGA TTACACAACC GGGGTACTGG ACGGAACGTT CACCATCCGC AATTCCGGTA AAAAGGATAT TCCCGCCGGC ATGAAGCTGA ATTATTCCAT CGACGGGATT TCCACCAAAT TGAACTGGGA GGGCAGGAAC GGTTCCGGCC GCGTGCAGAC GGACAACAGG GGAAGGCTGG ATTCCGGAAC GCTGGAGGTT CCCTCCATTC CCTCCGGAGG CGAGGTGCAG ATTTCCCTGA ACAGGAAATT TCCCGGTGTG AAGCCATGGA CGGCGGAAAC GCCCAACCTG TACAGGGTGA CTTATTCTCT GAATGGAAAG GATACCCGTT CCGTCAATAT CGGGTTCCGT TCCGTGGAGA TTGCGGATAA CGGCGCCGTG CTGATTAACG GCAGAGCCGT CAAGTTCAAG GGTGTCAACC GCCATGAAGC CCATCCCGAT TACGGGCGCG CCATTCCGCG GGAAGTGATG GAAAAGGACG TGCAGATTAT CAAGGCGCAT AATATCAATA CCGTCCGTTG TTCCCACTAT CCCAATCATC CTTATTTTTA TGAGTTGTGC GACCGCTACG GCCTGTACGT GATGGACGAA GCCAACTGCG AAGCCCACGG CATCCGCAAT AGCAGCATGG ATATTTCCCG GAAGCCTTCC TGGAAGAAAG CCCATGTGGA GCGCAATATG AGCATGGTGC ATCGTTCCAA GAACCACCCT TCCATTGTTT TCTGGTCCCT GGGCAATGAG TCCGGAAACG GTCCCAATTT TGAGGCGGCA GCGGCGGCTG TCAGGGCTTA TGACACTACG CGGCCCCTCC ATTACTGCGA ATTTCCGCAC GGCCACAAGG CCGTGGATAT GGATTCCGCC ATGTATCCGC CCGTGGACCG GGTGGAAAAC TGGGGGAAGC AGAAAACTTC CCGCCCCTTT TTCGTGTGCG AATATGCCCA CTCCATGGGG AATGCCCTGG GGAATTTCAA GGAGTACATG GATGCCTTCG AGTCTTCCCC GCGCATGGTG GGCGGGGCCA TCTGGGATTT CGTGGACCAG TCCCTCCGCG CCAATCCTGC CGGAAACGGC ATTTACAAGC CCGCCCCTTT CAAGGGAGTA ACACAGGCTT ACGGCGGCAT GTTCGGAGAC AGGCCCAACC AGGCCAATTT CTGCGACAAC GGCATTATTC TTGGCAACCG GAACACCACG GCCAAGACGA AAGAGGTGAA GAAAGTATAC CAGTACATGG CTTTTGAGCG CAAGGACGGG TCCCTGTCCG TTCGCAACAA ATATTTCCAT AAGCCTTTGA AAGGTTATAC GCTTTATCTG GTATCCCTTG TTCCCGGCGG CGGCCATGCC GTGGAGCGCA TGGTTCTGCC GGAGGTTCCC CCCGGCAAAT CCGCAACGGT TAATCTGCCT TCAGCCGCTA TGCGGACCGG TTCCCTGATG GTTCTGGCGG ATGCCCGGTT CAAGCTCCCG GAAGACGTGA AGGAACTTTC CTCCAAGCAA CTGGAACATG TGGTGAATGA GTGCGAAGCT TACGAGTGGT TCCCGGCATC TGCAGAGAAG GAGGTTCCCG TGCCTCCCCC GGCGGCGCTG CCTGCTGTTT CCGTGCTCCA GGGGGATTCC GTGGCCGTGC AGGGAAAAGG TTTTTCCGCC TCCTTCAAAA ACGGGATGCT TTCCTCCCTC CGGTATGGCG GTCGGGATTT GATTTTGCCC GGCTATCCGG TGGAGCTCCA GGCGTACCGT TCTCCGGTGG ATAACGATGC CTGGATCAGG AGCAAGGTTG AAGGGAAAAT GAAGATGCAG AATATGAAAG CGGAATATTC CGACGTTAAA GCTGCCGTCA TTTCCCCCGG CGTGGCCCGA ATCACGGCAC AGTTCCGGAC GAAAGGTTCC GAGCTTGCCT TTTCCGGGGA AGTCGCGTGG ACGGTTTTCG GCAACGGCAT TATCAATGCT TCCGTCCGAA TGTATCCCTC CGCCAAGGGA GAAGAACTCC TTCGGCTGGG CGTCACTTTC GGGATGCCTG CCGCGTATGA CCGGGTAGAG TACCTGGGGC TGGGACCGTG GGATAATTAC CGGGACCGCC GCACGAGCTG CTGGAAGGAC ATTTTCCGCA CTTCCGTGGA CGATATGTTT TTTGCTTATT CCCGGCCCCA GGATATGGGC AACCGCATGG AAACGGACTG GATAGCCTTG TCCAAACCCC AGGAGGACCA GGCTCTGTGG GTGGGGGCCG CCTCTCCCAG GGCTCCGCTG GAGGTTTCCG TCCTGCGTTA TACGCCGAAG GAGCTTAACG ATGCCAGGAG CCTGGACAGG CTGCCGGAGA AAAATAAAGT GATTGTGAAT CTGGACGCTT TCCAGATGGG GCTGGGCGGC TCTTCCTGCG GGCCCCGTCC GCTGGTCAAG TACCAGACAT TGAGCGGGGC CACAGCCCTG GGGTTTGTGC TGGCTCCCTC ATCCGCCCTG CTGAATCTGG CGCGCACGGG GCTGGCCGTT CCCCATTCCC CTGTCATTGA ACGGGATGGG GACGGCATGG TCAGTCTGAC TTCCTCTACG CCCGAGGCGG AGATAAAGTA TTCCGTCAAC AAGGGGCCGG AAAAAACGTA CCGGAATCCC TTCAAGCTTC CCGAAGGGGA AGTTAGGGCC TGGGCTGCCT CCATGAAGTC CGGCAAGGTT CCTTCCACGT CTCCCGGAGA GAGGAAATTC CCCCTCGTCA AGGGGCAGGG CGAATGGAAA ATTCTAAGCG CTTCTTCGGA AGAGCCGGAT ACCGGTTTCG CCCATTTTGC CATTGACGGG AATCCGGATA CCTATTGGCA TACGTCCTAT ACGAACGGCC TGCCGGGGTT CCCCCACTCC ATTGCCGTGG ATATGGGAAC CAGAATGAAG TTTACCGGAT TTATCTACAC GCCCAGAATG GACAAGGACA AGGGCCTCAT CAGCCAGTAC ACGTTTTCCG TTTCCGATGA CGGTCGGAAT TGGAGGGAAG TGAAAAAAGG CCAGTTCTCC TACCACTATA TCCGGAAGGA TCCGGCTGTT CAGCGCATCG ACTTCGGCAG GCCTGTGGAG GCCCGCTACT TTAAGCTTGA CGCCCGGTCT CCGGTGAGGG GCGGGGAACA GAGCGCCACC GTTGCGGAGC TGAATATCAT TACCCAATAA
|
Protein sequence | MKTVRAFLFS VMCLAPALPL LGDVPDWENE EVTGINKEAP RASVFPASDK TLSLNGDWKF KFSMTPDERP ADFFNPSYSV SGWDTVKVPS NWQLYGYGTA IYTNVPYPFK PNPPKVMGEP PKNWPAYRER NSVGSYRRDF NLPVSWKGEQ VMIRFDGVES AFYVWVNGRQ VGYSEDSYTG AEFDLTPYVR PGRNTIAVEV YRWSDGSYLE DQDFLRLSGI FRDVTLFAQP QTHVRDLFLK AGLDREDYTT GVLDGTFTIR NSGKKDIPAG MKLNYSIDGI STKLNWEGRN GSGRVQTDNR GRLDSGTLEV PSIPSGGEVQ ISLNRKFPGV KPWTAETPNL YRVTYSLNGK DTRSVNIGFR SVEIADNGAV LINGRAVKFK GVNRHEAHPD YGRAIPREVM EKDVQIIKAH NINTVRCSHY PNHPYFYELC DRYGLYVMDE ANCEAHGIRN SSMDISRKPS WKKAHVERNM SMVHRSKNHP SIVFWSLGNE SGNGPNFEAA AAAVRAYDTT RPLHYCEFPH GHKAVDMDSA MYPPVDRVEN WGKQKTSRPF FVCEYAHSMG NALGNFKEYM DAFESSPRMV GGAIWDFVDQ SLRANPAGNG IYKPAPFKGV TQAYGGMFGD RPNQANFCDN GIILGNRNTT AKTKEVKKVY QYMAFERKDG SLSVRNKYFH KPLKGYTLYL VSLVPGGGHA VERMVLPEVP PGKSATVNLP SAAMRTGSLM VLADARFKLP EDVKELSSKQ LEHVVNECEA YEWFPASAEK EVPVPPPAAL PAVSVLQGDS VAVQGKGFSA SFKNGMLSSL RYGGRDLILP GYPVELQAYR SPVDNDAWIR SKVEGKMKMQ NMKAEYSDVK AAVISPGVAR ITAQFRTKGS ELAFSGEVAW TVFGNGIINA SVRMYPSAKG EELLRLGVTF GMPAAYDRVE YLGLGPWDNY RDRRTSCWKD IFRTSVDDMF FAYSRPQDMG NRMETDWIAL SKPQEDQALW VGAASPRAPL EVSVLRYTPK ELNDARSLDR LPEKNKVIVN LDAFQMGLGG SSCGPRPLVK YQTLSGATAL GFVLAPSSAL LNLARTGLAV PHSPVIERDG DGMVSLTSST PEAEIKYSVN KGPEKTYRNP FKLPEGEVRA WAASMKSGKV PSTSPGERKF PLVKGQGEWK ILSASSEEPD TGFAHFAIDG NPDTYWHTSY TNGLPGFPHS IAVDMGTRMK FTGFIYTPRM DKDKGLISQY TFSVSDDGRN WREVKKGQFS YHYIRKDPAV QRIDFGRPVE ARYFKLDARS PVRGGEQSAT VAELNIITQ
|
| |