| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1587 |
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| Symbol | |
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| ID | 6275578 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Akkermansia muciniphila ATCC BAA-835 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010655 |
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| Strand | - |
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| Start bp | 1909268 |
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| End bp | 1910272 |
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| Gene Length | 1005 bp |
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| Protein Length | 334 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 642613647 |
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| Product | TIM-barrel protein, nifR3 family |
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| Protein accession | YP_001878188 |
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| Protein GI | 187736076 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0042] tRNA-dihydrouridine synthase |
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| TIGRFAM ID | [TIGR00737] putative TIM-barrel protein, nifR3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.65246 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 0.28847 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTTTT CCAACCGTCC CGCTCCCCTC CCGTTCTTCA AAACGGATTT CCCGCTGTTC
CTGGCTCCAA TGGCTGGAGT GACGGACCCC ATTTTCCGCA CTATCTGCAA GGAGCTTGGA
GTGGATGTAA TGGTAACGGA ATTCGTCTCT GCGGAAGGAA TTCTCCAGGC ATGGGAAAGA
AACCGCAGGT ACACAAAGAT AGAAAATGCC CACCGCCCCA TAGGCATCCA GCTCTTCGGA
GCGGATGGGA ACCACATGGG AGAGGCGGCC AGAATTATCC TGGACCATGA AAAGCCGGAT
TTTATCGATA TCAACTTCGG CTGCCCGGTT CCCAAGGTGG TTGGCAAAAA TGGAGGTTCC
TCCCTCCTGA AAGACCTTCC CCTGCTGGCT TCCGTTGCCG GAGGCGTCGT GAAAGCCGTA
GGAGAGAGAA TCCCCGTCAC GGCCAAAATA CGTATTGGCT GGGATTTTCA GAGCCTGTGC
GCCATGGACG CGTGCCGCCT GCTGGAGAAT GAGGGAATTT CCATGATCAC CATTCACGGG
CGCACCCGCT CCCAGCAGTA TTCCGGAACG GCCAACTGGG ACATTATTGA CGAATGCGCG
CGGGCCATGT CCGTGCCGGT CATCGGGAAC GGGGATATTT CCACCCCGCA GGCCGTAGCT
TATGTAAAAG AAAATACGGC CGTCAGCGGC GTCATGATTG GCCGTGCGGC CATGGAAAAC
CCATGGATTT TCGGAGACGC CAAGTATTAT CTGCTGCACG GAACCATGCC GCCGGCCAGA
GACCCGCAGG AAAAGGCGGC CCTGATTTTG CGGCATGCCC GGATGGCCCT GGAATCCCGC
CATTATGGGG ACGAACTTCA CACCATGCGC CATATGAGGT CACGAATCCT GGCTTATACG
AAGGGATTTC CCGGCGCCAA GGAAATGCGT TCCCGCCTGG TGCGGGTATC CAGCATGCCG
GAGCTGGAAG ACCTGCTTTC CAAGCTCCCC CGCCAGAAGC CCTGA
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| Protein sequence | MTFSNRPAPL PFFKTDFPLF LAPMAGVTDP IFRTICKELG VDVMVTEFVS AEGILQAWER
NRRYTKIENA HRPIGIQLFG ADGNHMGEAA RIILDHEKPD FIDINFGCPV PKVVGKNGGS
SLLKDLPLLA SVAGGVVKAV GERIPVTAKI RIGWDFQSLC AMDACRLLEN EGISMITIHG
RTRSQQYSGT ANWDIIDECA RAMSVPVIGN GDISTPQAVA YVKENTAVSG VMIGRAAMEN
PWIFGDAKYY LLHGTMPPAR DPQEKAALIL RHARMALESR HYGDELHTMR HMRSRILAYT
KGFPGAKEMR SRLVRVSSMP ELEDLLSKLP RQKP
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