| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1585 |
|---|
| Symbol | |
|---|
| ID | 6273643 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 1905728 |
|---|
| End bp | 1907386 |
|---|
| Gene Length | 1659 bp |
|---|
| Protein Length | 552 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 642613645 |
|---|
| Product | type II secretion system protein E |
|---|
| Protein accession | YP_001878186 |
|---|
| Protein GI | 187736074 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
|---|
| TIGRFAM ID | [TIGR02533] general secretory pathway protein E |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 54 |
|---|
| Fosmid unclonability p-value | 0.834386 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACACCA ACCTCACACT GGAACTTTTC ATCGGCCGGG GAATGATTGA CAAATCCCTG
GCAAAGGACA TCAAGGAGGA AATGATCGCC TCCGGCAAGG AGCTGCCGGA AGTGCTTGCA
GACTTCGGCA TCATCGGCAG CAAGGATGAT ATCTGGCAGA TGATTGCCAG CGACCTGGGT
ACGGAATTCA TTACACTGGA CAACTTCCAG CCGGATCCGA ACGTGCAGAA CATGATGCCG
GCCACGCTCG TGCGCCTGCA CGGGGCGCTC CCTGTGCGGC ATGGTCCGGA AGGCCTGTAC
GTCTGCCTGG TGGATCCCCT GAATCCCCAG ACGGTGGAAG ACCTGCGCTT CGCCCTCGGC
CAGGACATCC ATGTTCTGGT AGCGCCGGAT TACCAGATTT CCGAACGCAT CAATGAGCTT
TATGGAGGCG AATCCGCCGC CATGTCCGAC CTGATGCAGG AGCTGAACAA CATGCAGGTC
AACAATGAGA CGGAGGACTC CGCCGCCGCT CCCGTCATCC GCTTTGTGGA CCTCGTCATT
ACGCAGGCCA TCAAGGAAAA GGCCTCCGAC ATTCACTTCG AACCTTTTGA GAAGGAATTC
AAAATCCGCT ACCGTGTGGA CGGCGCCCTG TATGAAATGC AGCCTCCCCC CGTCCACCTG
TCCGTGCCGG TCATTTCCCG CGTCAAAGTC ATGGCGAACA TGAACATCGC GGAACGCCGC
ATTCCGCAGG ACGGACGCAT CGTCAAGCAG ATAGGAAACC GTTCCGTGGA CATGCGCGTT
TCCTCCCTTC CCACTCAGTA CGGAGAATCC GTGGTGCTCC GCGTTCTGGA CCGCTCTTCC
GTCAACTTGA ACATGGACAA CCTGGGGCTT CCCGCGCATA TCCACGAATA TATTCTGGAT
ACGGTCCACA AGCCCAACGG CATTTTCATC GTTACCGGCC CCACCGGCGC CGGCAAGACA
ACTACGCTGT ATGCCGCCCT GCGTGAAATC AATACCATTG ATTCCAAGGT GCTGACGGCG
GAAGACCCTG TTGAATACGA TATTGACGGC ATCATCCAGA TTCCTATCAA TGAAGCCATC
GGCCTGGACT TCCCAATGGT GCTCCGCGCC TTCCTGCGAC AGGACCCGGA CCGTATTCTG
GTGGGGGAAA TGCGAGACAT GGCAACAGCG CAGATCGCCA TCCAGGCATC CCTGACGGGT
CACCTGGTTC TCTCCACCCT GCACACGAAC GACTCCGCCG GAGCCATTAC GCGACTGGTG
GACATGGGAT GCGAACCTTT CCTGGTGGCG GCTTCCCTGG AAGGGGTGCT TGCACAGCGC
CTGGTGCGCA CCATCTGTCC GGACTGCCGC ACGCCGTATG AACCCTCATC CACCATCCTC
TCCCAGCTTG GCGTCTCTCC CTATGAACTG GGAGACAAGC ACTTTTTCAC GGGCCGAGGC
TGTGATAAAT GCTCCAATTC CGGCTACAGG GGCCGCAAGG GGATTTATGA GCTCCTGGAT
ATTAACGATA CCCTGCGCGA CATGATTACG GATCGCGCTC CTTCCGTGGT GCTGAAGCAG
AAAGCCATTG AAATGGGCAT GTCCACGCTG CGGGAAGACG GGCTGAGAAA TATTTATGAC
GGCAACACCA CCATTGAAGA AGTGCTGAAA TATACTTAA
|
|---|
| Protein sequence | MDTNLTLELF IGRGMIDKSL AKDIKEEMIA SGKELPEVLA DFGIIGSKDD IWQMIASDLG
TEFITLDNFQ PDPNVQNMMP ATLVRLHGAL PVRHGPEGLY VCLVDPLNPQ TVEDLRFALG
QDIHVLVAPD YQISERINEL YGGESAAMSD LMQELNNMQV NNETEDSAAA PVIRFVDLVI
TQAIKEKASD IHFEPFEKEF KIRYRVDGAL YEMQPPPVHL SVPVISRVKV MANMNIAERR
IPQDGRIVKQ IGNRSVDMRV SSLPTQYGES VVLRVLDRSS VNLNMDNLGL PAHIHEYILD
TVHKPNGIFI VTGPTGAGKT TTLYAALREI NTIDSKVLTA EDPVEYDIDG IIQIPINEAI
GLDFPMVLRA FLRQDPDRIL VGEMRDMATA QIAIQASLTG HLVLSTLHTN DSAGAITRLV
DMGCEPFLVA ASLEGVLAQR LVRTICPDCR TPYEPSSTIL SQLGVSPYEL GDKHFFTGRG
CDKCSNSGYR GRKGIYELLD INDTLRDMIT DRAPSVVLKQ KAIEMGMSTL REDGLRNIYD
GNTTIEEVLK YT
|
|---|
| |