| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1578 |
|---|
| Symbol | |
|---|
| ID | 6275169 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 1899649 |
|---|
| End bp | 1900215 |
|---|
| Gene Length | 567 bp |
|---|
| Protein Length | 188 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642613638 |
|---|
| Product | pseudouridine synthase |
|---|
| Protein accession | YP_001878179 |
|---|
| Protein GI | 187736067 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG1187] 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases |
|---|
| TIGRFAM ID | [TIGR00093] pseudouridine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.587542 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATTCTGG CGTTCAATAA ACCTTACGGT ATTCTCTCCC AATTTACGAA GGAGGCTCCC
CACCACCGGA CACTGGCTGA ATTCGGGTTT CCTCCTGGCG TGTATCCTGT AGGAAGGCTG
GATGCGGATT CGGAAGGGCT GCTTCTTTTA TCCGATGAGA AGGGCCTGGC GGACCGTCTC
CTGAACCCCT CCGGCAGGCA TCCCAGAACT TATTGGAGCC AGGTGGAAGG CACTCCTTCC
GAAACGGACC TTCGCCCTCT GGAACTCGGG GGCCTCCGCA TCCGCGGGCA CTGCACGCTG
CCTTGCCGGG CACGCCTCAT GCGCAGGGAG CCTGACGTGC CGCCCCGCAT CCCTCCCGTC
CGCTACCGCG CCTCCATTCC CACCTCATGG CTGGAATTGA CGCTGGTGGA AGGGAAAAAC
CGCCAGGTGC GGCGCATGAC CGCCGCCATC GGTTTTCCCA CACTCCGGCT TCTTCGCGCC
AGAATCGGAA ATTTCTCCCT GGCGGGACTG AAACCCGGCG CATGGAAAGA ACTGGATTCC
CGCGAGCGAA GGCAGCTCAT GCCGTAA
|
|---|
| Protein sequence | MILAFNKPYG ILSQFTKEAP HHRTLAEFGF PPGVYPVGRL DADSEGLLLL SDEKGLADRL
LNPSGRHPRT YWSQVEGTPS ETDLRPLELG GLRIRGHCTL PCRARLMRRE PDVPPRIPPV
RYRASIPTSW LELTLVEGKN RQVRRMTAAI GFPTLRLLRA RIGNFSLAGL KPGAWKELDS
RERRQLMP
|
|---|
| |