| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1574 |
|---|
| Symbol | |
|---|
| ID | 6275115 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 1897485 |
|---|
| End bp | 1897949 |
|---|
| Gene Length | 465 bp |
|---|
| Protein Length | 154 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 642613634 |
|---|
| Product | tRNA/rRNA methyltransferase (SpoU) |
|---|
| Protein accession | YP_001878175 |
|---|
| Protein GI | 187736063 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0219] Predicted rRNA methylase (SpoU class) |
|---|
| TIGRFAM ID | [TIGR00185] rRNA methylase, putative, group 2 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 65 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCCCC GTTTCCACAT CGTCATGTTC CATCCGGAAA TTCCGCATAA TACAGGAGCT
GCCGGACGGT TGGCGCTGGC AACGGGTTCC AGGCTCCATT TGATCAAACC TTTGGGGTTC
AGTCTGGATG AAAAGCATGT GCGCCGTACG GGTCTGGACT ATTGGGCCAA GGTGGACCTG
CATGTCTGGG ACAGCCTGGA GGAATTGAAG CAGGCGGCAG CCCCCGGCGC GCAGTTCTGG
TACCTGAGCA CCAAGGCGCC ACGTTCCCAT TGGGATGCGG TTTTCCACGC AGGGGACTAT
CTGGTTTTTG GACCGGAATC CCGCGGATTG CCGGAAAGCA TGCTGAGAGA ACACGCAGAT
ACCGCCCTGA CTATTCCGAT GCCCGGAGAA GGAGCCCGCA GCCTGAATTT ATCCACAGCC
GTAGCTGTCG TCCTTTATGA AGGACTGCGC CAGACCGGCA TTTGA
|
|---|
| Protein sequence | MQPRFHIVMF HPEIPHNTGA AGRLALATGS RLHLIKPLGF SLDEKHVRRT GLDYWAKVDL
HVWDSLEELK QAAAPGAQFW YLSTKAPRSH WDAVFHAGDY LVFGPESRGL PESMLREHAD
TALTIPMPGE GARSLNLSTA VAVVLYEGLR QTGI
|
|---|
| |