Gene Amuc_1540 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmuc_1540 
Symbol 
ID6273670 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAkkermansia muciniphila ATCC BAA-835 
KingdomBacteria 
Replicon accessionNC_010655 
Strand
Start bp1851095 
End bp1851529 
Gene Length435 bp 
Protein Length144 aa 
Translation table11 
GC content50% 
IMG OID642613599 
Productribosomal protein L36 
Protein accessionYP_001878142 
Protein GI187736030 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0257] Ribosomal protein L36 
TIGRFAM ID[TIGR01022] ribosomal protein L36, bacterial type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000000114042 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones69 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTTATACG AATCCCCTCC GGTCCACAAA CCCTTTATTC CCCCGGCAGA GGTCCCTTCC 
CGCATTTTAT TTTCCCGGCT AAATGACGTC TTCCCTAAAT TTTTCCGCCG GCGCGGAATC
CAAAGCCATC CCATGCTTTA CTGCATCTTC CTCATAAAAG CATCTCTGCG GAGACGGCAT
CTTACTTTTG GCAAAGAAAT GACTTTACAA TTCTTAACTA AACGGTATAT TCCGTCTCCC
GAACCGAACA CCAAACCGGA GTTATACACC ATGAAAGTTC TTTCTTCCTT AGCCTCTATG
AAGCGCCGCC ACGCAGACTG CCAAATCGTG AAGCGCAAGG GCACGCTGTA TGTGATCTGC
AAGAGCAATC CCAAGTTCAA GGCCCGCCAG GGCGCTACGG CAGGCACGCG CCTTTCCAAA
AAGGGCGTCA AGTAA
 
Protein sequence
MLYESPPVHK PFIPPAEVPS RILFSRLNDV FPKFFRRRGI QSHPMLYCIF LIKASLRRRH 
LTFGKEMTLQ FLTKRYIPSP EPNTKPELYT MKVLSSLASM KRRHADCQIV KRKGTLYVIC
KSNPKFKARQ GATAGTRLSK KGVK