| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1517 |
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| Symbol | |
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| ID | 6275799 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Akkermansia muciniphila ATCC BAA-835 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010655 |
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| Strand | - |
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| Start bp | 1811834 |
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| End bp | 1812520 |
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| Gene Length | 687 bp |
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| Protein Length | 228 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 642613576 |
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| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_001878119 |
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| Protein GI | 187736007 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.000360016 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.000000000680487 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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| |
Sequence |
| Gene sequence | ATGAATGTGC CCCCATTGCA ACCCCATAAC GAGTCCCAGC CTGACGAGCA GACACTTTCC
CAATACGCGG AACATACCAG GAAAAGCCTG ATCGCGCGTT TGGAAAACTG GGAAGACCAG
CGTACCTGGG ATGAATTTTA CCGGACATAT TGGCGGCTTA TTTATTCCGT CGCCCTCAAG
GCCGGATTAA GGGAAGACGA GGCCTGGGAC GTGGTACAGG AAACCATTCT TTCCATCGCC
AAGCAGAGCA GGAAAAATAT TTACAAACCG GAACAGGGTT CCTTCAAACT CTGGCTATGG
AACATGACCC GCTGGCGCAT CAATGACCAG TTCCGCAAGC GGAAAAAGGA CACGGCCATG
CTGATGAACC CTGATGCCAC GGATACCCTG GAACACCCCA TCGACAAAAT CCCGGATGAA
GGGAAGAATA ATTTTGACCA GGTATGGGAA CGGGAATGGC AGAATAACCT TCTTCAGGCG
GCTCTGGAAC GCGTCAAAGC AAAAGTGTCG CCCAAGCAGT TCCAGATTTT TGACTATTAT
GTCCTGCGGG AGTGGGACGC GGCCAAGGTC CGCCGGCAGC TCGGCGTCAC GATTGCCCAG
GTCTATCTGG CAAAGCACCG CGTAGGAAGC GCTTTGAAGA AAGAACTGCA ATTTCTTCAA
TCCCAGGAAA AGGAAAAAGA AAAATAG
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| Protein sequence | MNVPPLQPHN ESQPDEQTLS QYAEHTRKSL IARLENWEDQ RTWDEFYRTY WRLIYSVALK
AGLREDEAWD VVQETILSIA KQSRKNIYKP EQGSFKLWLW NMTRWRINDQ FRKRKKDTAM
LMNPDATDTL EHPIDKIPDE GKNNFDQVWE REWQNNLLQA ALERVKAKVS PKQFQIFDYY
VLREWDAAKV RRQLGVTIAQ VYLAKHRVGS ALKKELQFLQ SQEKEKEK
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