| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1516 |
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| Symbol | |
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| ID | 6274664 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Akkermansia muciniphila ATCC BAA-835 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010655 |
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| Strand | - |
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| Start bp | 1810066 |
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| End bp | 1811703 |
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| Gene Length | 1638 bp |
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| Protein Length | 545 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 642613575 |
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| Product | putative PAS/PAC sensor protein |
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| Protein accession | YP_001878118 |
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| Protein GI | 187736006 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG2208] Serine phosphatase RsbU, regulator of sigma subunit |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00955123 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.00000000236227 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | ATGCCGCCCT CACGCAACAG ACATTCCGCC CAGAGAGTTT TTACCTGGGA CAAAATCAAA
ATGGCCCTGG CGGCGGCGGA AGAAGGATTT TATATCTGGA ATATTAAAAC GGGCGTCATT
CATTACACGG ACCGCTGCCT GACCATGATG GGGGCCAGCC GCAAGGAGAA AGCCCCCAAT
ATCTTCACCC AGCCGGAGCT TACCATACAC GAGGAAGACC AGGCTTTTTT TTCCCAGGAA
GTGCGCCGTT ATCTGGACGG CCACTCCCAT GTGCCCATGC GCATTGAAAT CCGGATGAAG
AAGCTGAACT CCAAAAGCTG GAGCTGGGTC CGCGTCAACG GACTCGCCCG CAGGGACAAG
CAGCGCCGGC CCGTTATGCT GGTGGGCGTA TGGGTCAATA TTACCCGGCG GAAAACAGCG
GAACTGCGTG CTGCGGAGGA CAGGGACCTG TTTCATACCC TGATTGAACA CATTCCCGAC
AGTATCTATT TCAAGAACCG GGAATCACGT TTCGTCCTGG CGAATACCGC CACAGCCAAT
AAGCTGGGCG TACCGACGCC GGCAGACCTG ACCGGACGCA CGGACGATTA CTTTTTTGAC
CAAACGATGT CCGATATTTC CCGCAAGGAG GAAATGGACA TCATGGTTAC CGGACGCCCC
ATCCGCGCCC GCCTTCATCA TGAGACATGG CTCCACAAGG ATGATTCCTG GAGCCAGATC
AGCAAGTTCC CGTGGTACGG ACGCAACGGA GAGCTAAAGG GAATTGTAGG TATTTCCAGT
GATGTCACCA AACTGGTGAA GACTGAAATC AAGGCCACGG AAACGGCCCG CATCCTGGAG
GAACGCAACA GAACTCTGGA AAAGGAAATA GATTTGGCCA GGGAAATCCA GTTCGCCCTG
CTTCCCTACG AAATTCCCTC CCGCTCCCAT ACGGAACACG GCCTGACCCG CCATGCGGAT
TTTCACCATA TTTTCACTCC TTCGGAGGGG GTTGCAGGAG ACTGGTTCGA TGCTTTTCCC
GTAGGCAGTT CCGGCGTCGG CGCCATTGTC TGCGACGTGA TGGGCCACGG CATCCGCGCC
GCCCTGATCG CCTCCATGCT CCGCGGCCTG ATGGAACAGT TGTCCCACCT GGCGGATAAC
CCGGCGGCTT TCCTTACTTC CCTCAACCAC CAGCTCGCCA AAATCCTGCA ACGGGCGAAC
ACCACCATGT TTGCCTCTGC CGTTTATATT TACCTGGATC TGGAAACCGG GGTCATGACG
GCTTCTACAG CCGGGCATCC GCATCCCATC ATTATGGGAC CGGACGGAGT CGCCCGCAAA
ATGCCGCTGC CCAAAGGAAT CGCCCTGGGG CTGCTGGATG ACGCTACGTA CCATAATGCC
CAGTTTTCGC TCCTGGCGGG GTCCCGCATC CTGATGTACA CGGACGGCCT GACGGAAGCA
GCCAACCAGG ACGGGGAAGA AATGGGCGTG GAAAGGCTGA TTGACTATTT CAATAATTCC
TCCCCCCACA GCACCAAGGA TTTTGTCCAT CAGGCCCTTA CCTGCGTAGC CAAATTTACC
GGCTGCACCA ATCAGGCCGA CGATATCTGC ATGCTGGGCA TCAGCTATTC CGAACACGAG
GCAGAAACGG ACGGCTAA
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| Protein sequence | MPPSRNRHSA QRVFTWDKIK MALAAAEEGF YIWNIKTGVI HYTDRCLTMM GASRKEKAPN
IFTQPELTIH EEDQAFFSQE VRRYLDGHSH VPMRIEIRMK KLNSKSWSWV RVNGLARRDK
QRRPVMLVGV WVNITRRKTA ELRAAEDRDL FHTLIEHIPD SIYFKNRESR FVLANTATAN
KLGVPTPADL TGRTDDYFFD QTMSDISRKE EMDIMVTGRP IRARLHHETW LHKDDSWSQI
SKFPWYGRNG ELKGIVGISS DVTKLVKTEI KATETARILE ERNRTLEKEI DLAREIQFAL
LPYEIPSRSH TEHGLTRHAD FHHIFTPSEG VAGDWFDAFP VGSSGVGAIV CDVMGHGIRA
ALIASMLRGL MEQLSHLADN PAAFLTSLNH QLAKILQRAN TTMFASAVYI YLDLETGVMT
ASTAGHPHPI IMGPDGVARK MPLPKGIALG LLDDATYHNA QFSLLAGSRI LMYTDGLTEA
ANQDGEEMGV ERLIDYFNNS SPHSTKDFVH QALTCVAKFT GCTNQADDIC MLGISYSEHE
AETDG
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