| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1514 |
|---|
| Symbol | |
|---|
| ID | 6275751 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 1806589 |
|---|
| End bp | 1808571 |
|---|
| Gene Length | 1983 bp |
|---|
| Protein Length | 660 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 642613573 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_001878116 |
|---|
| Protein GI | 187736004 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3064] Membrane protein involved in colicin uptake |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.767692 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 0.00000248553 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGCAGAAAT GGGAAAGATT CTTTCCCAAT CCCGATTACA TGAACATTCC CTCTTTTTCC
CGTAGCGTTT CCAGAGGTTC CGCCGTGGGC TGGTTTTTAG TGTTGCTGCT GGTTTGCGGT
GCCGGAGCCG GATATTATCT TTACCAGGAT AACCTGGCAA AAAGAAAAGC GGCCCAGGAA
TTGACCGCCG AACGTAAATT GAAGGAGAAG AAGGCCAGGG AAGCTGCGGA GAAACAGCGA
ATAAAACGGG AACGGGAAAT CAGGGAGAAG AAGGAAAAGG AACGGCTGGC GGCCCAGAAG
GCTTATGAGG AAGCGCAGGA AGAGAAGGCG CGGCAGGCGG CGGAAGCGGC CCGTAAGCTT
CAGGAGCAGG CCGAACGCGA AGAACGGGAA AAAAGGAGAA GGGAGGAGCT GGAACGGCGC
GAACGTGAGG AAGAGGCCCG CAGGCAGGAG GAAGATACTC CTGTGGAGGA AGAGCCTGAA
CCGGAAGGGC GTTTTCCCCA ACCCGTGAAA AACCGGATGC CGGAGCTTTC CGTTTATTCT
ATTCCTTGCA GGGATGATAT CCAGACGGAA AAAGACAAGC TGCTGGAAAC ATGGTCCTGG
GACAAGGCGG AAAAAATGGA GGGTATGGAG GAATTCCCCA CGGGTTCCTC TCCGTGGAAA
AAAGGGAAAG ACGCCGGACG CATGCAGGCG CTTCTGGAAA AATGCCGGGA ATGGAAGGAT
GCCAAACTTG CCTCGCTGAA GGCGTGCCCG GCGGCGAAGG ATTTTCCCGG CGTTCCGGAG
AATGGGGCCC AGACGGTCAG GCGGACGGTG GAGATAGATT CCAATATTGG AGGCTGGCAT
AGTACGGGAC TGTATGCGCC GCCCGGGGCG GAAATTTCGT GTTCCCTGTC CGGCGCTCCC
AAAGACGGTT CGATCAGCGT CCGCATAGGA TGCCATACGG ACAGCCTTCA TAAGCTGGAT
GAATGGAAAA GAGTGCCGGA AATAACCATG CAGGTTCCGG CTGGCCGTGG GCGCGTGAAA
ATGGTGAATC CGATGGGCGG CCTTGTTTAT GTGAATGTAG GCCAGCGTCC CAGACGGGGA
AAGGTCTTCA AGGTTCAGAT TTCCGGAGCC GTGCCTTCAC CTCTGTTCGT AATGGGGAAG
ACCACTCCGG AACAATGGGC CGAACAATTG GAAAATACCA AGGCCCCGTG GGGGGAAATC
CGCATGCCCC GGCTTATTGT CACGATGCCC GTGGAACAGC TGAAACAATG TCCGGATGTT
CAGAAGACGG CGGAATTTCT GCAAAAAAAC ATGGCTCTTC AGGACTGGAT TATGGGATGG
GATACCAAGC CGGACCGCCT GCATCATCCG ATGCGCTTTG TCGTGGACAG GCAGATATCC
GCCGGGGCCG GGCATTCCGG TTATCCCGCC ATGGCCACGA AGGACTGGAC GAATTCCATT
GCCACCGGTT CCATCATCCA TTCCGGAAGC TGGGGTTTGT GGCATGAACT GGGGCATAAC
CACCAATCCC CTCCCTTTAC GATGGAAGGC CAGACGGAGG TATCCGTCAA CATATTCTCC
ATGGTGTGTG AAGTGATGGG GACTGGAAAA GACTTTGAAT CCTGCTGGGG CGGCGGCATG
GGGCCGTACG GCATGAGCGC GGAAATGAAA AAATATTTTT CAGGCACCCA GACTTACAAT
GAGGCTCCCA ACAAGGTGCA GCTCTTCTTC TGGGTGGAGC TGATGTACTA TCTGGGGTTT
GACGCCTTCC GCCAGGTGGC TCTTCAATTC CATGACAAGC CTTATGACAA CGGCGAACTG
AGTGATGAAA AGAAATGGGA ATGGGTCATG AACGCTTTTT CCAAGGTCAC GGGAAAGAAC
ATGGGGCCTT TCTTTAAGAT TTGGCGTACG CCGGTTTCCG AACGCGCTAC GGGCAGAATG
AAAGACCTTC CCGCCTGGCT TCCTTCCAAG GATTATCCGG CCTGTTATAC CGCAGAGGAA
TAA
|
|---|
| Protein sequence | MQKWERFFPN PDYMNIPSFS RSVSRGSAVG WFLVLLLVCG AGAGYYLYQD NLAKRKAAQE
LTAERKLKEK KAREAAEKQR IKREREIREK KEKERLAAQK AYEEAQEEKA RQAAEAARKL
QEQAEREERE KRRREELERR EREEEARRQE EDTPVEEEPE PEGRFPQPVK NRMPELSVYS
IPCRDDIQTE KDKLLETWSW DKAEKMEGME EFPTGSSPWK KGKDAGRMQA LLEKCREWKD
AKLASLKACP AAKDFPGVPE NGAQTVRRTV EIDSNIGGWH STGLYAPPGA EISCSLSGAP
KDGSISVRIG CHTDSLHKLD EWKRVPEITM QVPAGRGRVK MVNPMGGLVY VNVGQRPRRG
KVFKVQISGA VPSPLFVMGK TTPEQWAEQL ENTKAPWGEI RMPRLIVTMP VEQLKQCPDV
QKTAEFLQKN MALQDWIMGW DTKPDRLHHP MRFVVDRQIS AGAGHSGYPA MATKDWTNSI
ATGSIIHSGS WGLWHELGHN HQSPPFTMEG QTEVSVNIFS MVCEVMGTGK DFESCWGGGM
GPYGMSAEMK KYFSGTQTYN EAPNKVQLFF WVELMYYLGF DAFRQVALQF HDKPYDNGEL
SDEKKWEWVM NAFSKVTGKN MGPFFKIWRT PVSERATGRM KDLPAWLPSK DYPACYTAEE
|
|---|
| |