Gene Amuc_1477 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmuc_1477 
Symbol 
ID6274444 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAkkermansia muciniphila ATCC BAA-835 
KingdomBacteria 
Replicon accessionNC_010655 
Strand
Start bp1768113 
End bp1768982 
Gene Length870 bp 
Protein Length289 aa 
Translation table11 
GC content62% 
IMG OID642613537 
Product4-hydroxythreonine-4-phosphate dehydrogenase 
Protein accessionYP_001878080 
Protein GI187735968 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG1995] Pyridoxal phosphate biosynthesis protein 
TIGRFAM ID[TIGR00557] 4-hydroxythreonine-4-phosphate dehydrogenase 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value0.254456 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones52 
Fosmid unclonability p-value0.376978 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAACCGG TCATTGGATA CACGCTGGGC GACCAGTCGG GCATAGGCCC GGAAGTCATC 
TCCGCCGCGC TTGCCTCCGG AGAACTCCCG GAAGATGCGG AATACCGCCT CATCGGCAAG
AGAGTGGAGC TTCCCCCGGG AAGGCCTAAT GCGGAATCCG CCAAACACGC CTTCGACCAT
CTGGAACAGG CGGCCCATGC CCTGCGGGAA GGAACGGTTG ACGCTGTTGT CACCGCCCCC
GTCTGCAAGG AAACCCTGCA TGAGGCAGGT TTCCGCTGGC CGGGGCAGAC GGAATTCTTT
GCAGAACGCC TGAAAACGGA CAATTACGCC ATGTGCCTGA CCGGGAAACG GTTGACGGTG
GGGCTGGCAA CCATTCATAC TTCCCTCCAA AGCGTGCCTT CCCTGCTGGA AACAGAGGAA
CTGGTCCGCA TCGGAACCCT GCTGAAAGAC TTCTGCATCC GCAAAGGAAT CATGCGCCCG
CGTATCGCCC TGGCAGCCCT GAACCCCCAC GCCGGGGAAC ACGGCGCTTT CGGCGATGAG
GACGGGAACA TCATTGCCCC GGCCGTGGAA CGGCTGAGGG CGATCCATCC GGATGCTGCA
TTTGACGGGC CTTCCGTCCC GGACTGCGTG TACCGGGATG CCGTGGAAGG AAACTATGAC
GCCGTGCTGG CCCCTTACCA TGACCAGGGG TTGATTCCGC TGAAGCTGGT GGACTTCCAT
ACCGCCGTCA ACGTCACCCT GGGCCTTCCC CGCCCCCGGC TGAGCCCGGA CCATGGTACC
GCCTTCAACC TGGCGGGAAC CGGAAAAGCC AATCCGTCCA GCACCATCCA CGCCTTCCAG
CTGGCCGTAC AGATGGCGCG GAGGCGTTAA
 
Protein sequence
MKPVIGYTLG DQSGIGPEVI SAALASGELP EDAEYRLIGK RVELPPGRPN AESAKHAFDH 
LEQAAHALRE GTVDAVVTAP VCKETLHEAG FRWPGQTEFF AERLKTDNYA MCLTGKRLTV
GLATIHTSLQ SVPSLLETEE LVRIGTLLKD FCIRKGIMRP RIALAALNPH AGEHGAFGDE
DGNIIAPAVE RLRAIHPDAA FDGPSVPDCV YRDAVEGNYD AVLAPYHDQG LIPLKLVDFH
TAVNVTLGLP RPRLSPDHGT AFNLAGTGKA NPSSTIHAFQ LAVQMARRR