| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1399 |
|---|
| Symbol | |
|---|
| ID | 6275668 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | + |
|---|
| Start bp | 1671794 |
|---|
| End bp | 1674121 |
|---|
| Gene Length | 2328 bp |
|---|
| Protein Length | 775 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 642613456 |
|---|
| Product | (NiFe) hydrogenase maturation protein HypF |
|---|
| Protein accession | YP_001878004 |
|---|
| Protein GI | 187735892 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0068] Hydrogenase maturation factor |
|---|
| TIGRFAM ID | [TIGR00057] Sua5/YciO/YrdC/YwlC family protein
[TIGR00143] [NiFe] hydrogenase maturation protein HypF |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.159442 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 63 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCATCA CCACCATTGA ACAGGCCGCC GCGGCATTGA AATTTGAGAT AGCCGGCATG
GTTCAGGGGG TCGGCTTCCG TCCCCATGTG TACCGTTTGG CGGTACGGCA CGGATTGAAA
GGGTTTGTGC GCAATACGGA GTCCGGCGTG GAGATTCATG TGGAAGGGGA GCCCGGCGCT
CCGGAGCGTT TCTGGACCGC GCTGATGGAC GGCCTGCCGG AGCATGCCCG GGTTTATGGA
GTGGAGCGGA CCGTATGCGA GCCTGCCGGT TTTGAGGAAT TCCGCATTGA GGAAAGCGAT
TCCACCCCCG GAGGCGTTCC GGTGATGCTG CCGGATCTGG CTCCGTGCCC AGAGTGCCTG
GAAGAAATGC ACGACCCGTC TTCCCGCCGG TATCATTATC CGTTTACCAA CTGCACGCAC
TGCGGTCCCC GCTATTCCAT TATTGAGACA ATGCCGTATG ACCGAGCGAG AACCAGCATG
AAGGGGTTCC GAATGTGTCC GGAGTGCCGG AGGGAGTACC AGGATGTGGA GGACAGGCGT
TTTCACGCAC AGCCTATCGG CTGCCCGTCC TGCGGTCCTT CCGTGAAGGT GCTGTTTTCA
GATGGTTCAG AACTGGGGTT CGGCCATGGG TTTGATACCC CCGCGGCACA GGTGGCATGG
GTGCTGGCGG ACGGTTTGAT TGTGGCCCTG CTGGGCGTAG GAGGTTTTCA ATTGCTGGCA
GATGCTTCTT CGGAAGCTGC CGTCAGGCGT CTCCGGCGGT TGAAGGAGCG TGACGCCAAG
CCTTTTGCCG TGATGGTGCC GGATGTGGCT GCGGCGGAGA GGCTGTGCCG CCTGTCGGAG
GAGGAAAGGC GCCTGCTGAC TTCTCCGGCC GCCCCCATTG TACTGGCCCG GGGGGGGAAG
GATGTGGATC TGGCTCCTTC CGTGTGCATG TTCAGCCGTT TTGTGGGGAT AATGCTTCCG
TCTTCCCCTC TTCATGCGCT GCTGATGGAT GTGTGGGGAA AGCCTCTGGT GGTGACCAGC
GGGAACCTGA GCGGCGAGCC CCTGTGCGTC TCCGTGGAGG AGGGGCTGGA GAAACTGGGC
CATGTGGCGG ATGTGTTTTT GGTGCATGAC CGTCCGGTAG TGCGGCCCGT GGACGATTCC
GTGGTCCGCG TTACGGACGG CAGGGCCATG ATGGTTCGCC GCGCCCGCGG ATATGCCCCG
CGGCCTGTGT GGCGCACATC TGCGGCGGCT CCCGACATGC TCGCCTTGGG GGCCGGACTG
AAGAATACCA TCTGCTGGCT GAAAAGGGGC GTGGCTGTCA TGAGCCAGCA TCTCGGTGAC
CTGAGCAGTG CGGCTTCTCT GAACGCTTTT GAGCGGACGG TGGAGGCGCT GGGCAGAACC
CTGGATGCCG TTCCGCAGGT AATTGCCGTG GACGCCCATC CGGACGGCCC CACTTTTGCC
CTTGGCCGGC GTCTGGCGCG GAAGTGGAAT GCAACGGTTG TCCCTGTGCA GCATCATCAG
GCTCATGTGC TGGCCTGCGC CGTGGAAAAT GAAACGCCGT TTCCCGCTTT GGGCATAGCT
TGGGACGGGA CGGGGTTCGG TACGGACGGA ACGGTATGGG GAGGGGAATT TTTTGTGTTG
GAGGAAGAGG GTGAGCCGCG CAGGGTGGCC CGCCTCAGGC CGTTTCTTCT TCCTGGTGGG
GACGAAGCGG TTCGGGAACC TTCCCGGTGC GCCTGTTCCC TGGCCCGTCA GATGGGGCCG
TGGCGTACGT ACGGGCTTGA TAAGCGTCTG GAGAGGGGGA TGCCTGTGCG GAAACGCGAG
GTTCTGGAGG CGATGATGGC CCGGAATATC CATTGTCCGT CCTCCTCGTC CATGGGGCGG
TTGTTTGATG CCGTGGCTTT CTGGTGCGGT TTTGACGGTG CGGCGGGGTG TGAGGGCCAT
GCCGCCATGA TGCTGGAATC ATGGGCCGCG GAAGCTTCCG GGGAAAAAAT GCCGGGGGAC
GCGTATGAAT GGGTCATGCA TGAAGAAGGG GGATTGCTGG AACTGGATTG GCGGCCGCTG
ATGAAGTCTG TGGATGAAGA TTTGTTGGAA GGCGTTTCCC GCGGCTGCAT CGCCCGCAAG
TTTCATGAGA GCCTGGTGAA TCTGGTTTTT GACGTGGCGG AGCGTTTCTG CCTGGATAGG
CTGGTGCTGG GCGGCGGATG TTTTCAGAAT GCCTTTTTGC TTGAAGGACT GGCGGGGATG
GCCCAGTCTA GAAGGTGCCA GTTGTCTCTG CCCCAGCGGG TGCCGTGCAA TGACGGGGGA
ATTTCCCTGG GGCAGGTTGC GGCGGTCGTA CGCCAATGGA AAGGATAG
|
|---|
| Protein sequence | MAITTIEQAA AALKFEIAGM VQGVGFRPHV YRLAVRHGLK GFVRNTESGV EIHVEGEPGA
PERFWTALMD GLPEHARVYG VERTVCEPAG FEEFRIEESD STPGGVPVML PDLAPCPECL
EEMHDPSSRR YHYPFTNCTH CGPRYSIIET MPYDRARTSM KGFRMCPECR REYQDVEDRR
FHAQPIGCPS CGPSVKVLFS DGSELGFGHG FDTPAAQVAW VLADGLIVAL LGVGGFQLLA
DASSEAAVRR LRRLKERDAK PFAVMVPDVA AAERLCRLSE EERRLLTSPA APIVLARGGK
DVDLAPSVCM FSRFVGIMLP SSPLHALLMD VWGKPLVVTS GNLSGEPLCV SVEEGLEKLG
HVADVFLVHD RPVVRPVDDS VVRVTDGRAM MVRRARGYAP RPVWRTSAAA PDMLALGAGL
KNTICWLKRG VAVMSQHLGD LSSAASLNAF ERTVEALGRT LDAVPQVIAV DAHPDGPTFA
LGRRLARKWN ATVVPVQHHQ AHVLACAVEN ETPFPALGIA WDGTGFGTDG TVWGGEFFVL
EEEGEPRRVA RLRPFLLPGG DEAVREPSRC ACSLARQMGP WRTYGLDKRL ERGMPVRKRE
VLEAMMARNI HCPSSSSMGR LFDAVAFWCG FDGAAGCEGH AAMMLESWAA EASGEKMPGD
AYEWVMHEEG GLLELDWRPL MKSVDEDLLE GVSRGCIARK FHESLVNLVF DVAERFCLDR
LVLGGGCFQN AFLLEGLAGM AQSRRCQLSL PQRVPCNDGG ISLGQVAAVV RQWKG
|
|---|
| |