| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1388 |
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| Symbol | |
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| ID | 6275639 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Akkermansia muciniphila ATCC BAA-835 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010655 |
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| Strand | + |
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| Start bp | 1657289 |
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| End bp | 1659046 |
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| Gene Length | 1758 bp |
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| Protein Length | 585 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 642613445 |
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| Product | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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| Protein accession | YP_001877993 |
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| Protein GI | 187735881 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
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| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.715567 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 44 |
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| Fosmid unclonability p-value | 0.0640691 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAGTCTT CCTATTGTCC GAGTCCTTAT CGATATACGC GCCGCGTAAC CCGTGAAGTC
ATGGTGGGGA ATGTGGGGGT GGGCGGATCC AATCCCATCC GGATCCAGTC CATGCTGACG
TCCGATACGC GGGATACGGA TGCCTGCGTG AAGGAGGCTT TGGAGCTGGC GGAGGCAGGG
TGCGAGATTA TCCGCCTGAC CGCCCAGACC AAGGCGTATG CCGCCAATTT GGAGAATATT
GCCCGGGAAT TGCGCGCTGC CGGCTGCCAT GTGCCTCTGG TGGCCGATAT CCACTTCAAG
CCGGATGCCG CGATGGAGGC TGCCAAATGG GTGGAGAAGA TTCGTATTAA TCCGGGCAAT
TTCGTTGATA AGAAGAAGTT TGAAGTGCGG GAGTATTCCG ACGCCGAATA CCGCGAGGAG
CTGGACCGCC TGAAGGAAGA ATTTACGCCC CTGGTTCTGT TTTGCCGGGA GCATGGCCGC
GCGATGCGCA TCGGTTCCAA CCATGGCTCC CTGTCCGACC GCATTCTGAA CCGCTTTGGC
GATACGCCGG AGGGGATGGT GGAGAGCGCG ATTGAGTTTG CCCAGATTGC CCGCGACCTG
GATTACCATT CCCTGGTGTT TTCCATGAAG GCTTCCAACG TCAAGGTGAT GGTGGCCGCT
TACCGATTGC TGGTGGAGCG CATGAACGCC CTGGGGCCGG ATTGGAATTA TCCCATTCAT
CTGGGGGTGA CGGAAGCCGG GGGCGGAGAG GACGGCCGCA TCAAGAGCGC CGTGGGCATC
GGCTCCCTGC TGACGGACGG CATTGGTGAT ACCCTGCGCG TTTCCCTGAC GGAGGACGCT
GTGAGGGAGG TGCCCGTGGC TTACCGCCTG TCCAATCCTT TCCAGCCGTC GGAGCGTTCC
GATGACCCGG TTTCCTTCCC TGAACCGGAG TTGAGCTATG ATCCCCTGAA GTTTTCCAAA
AGGCAGGGTG GGCTGGCGAT GTATTATGGC GTACGCCTGG GCTGGGAACA GCCTGTGCGC
GTGGCGGTTC CTGACGCCGG GTTTTACGCC CTGCAGACAG AACGGGAGGC GATGGGGGAC
ATGATGCCTG AATTATCCCT GGGGCAGCTG GATGCCATTG AGGTGGATCC CCGGTGCGAT
GCCGATCTGG AGCCGTTGAA GGAGCTGGCG GAACCGTCTA TTGTTACTGT GAAGAACGGG
CTGGCTATGG AGCCTGTATA TGCGTTCCGC CTTCTGGCTG CCCGTATTGA GGACAGGCAT
CTGATCCTGC TGAAGGATAC GCTGGTGCCC GGTTCCGTTT CCGGGGAAGA CGTGCCGCTG
ACGGCTGCCC GCAATATCGG CTCCCTGCTG TGCGACGGGA TTGGAGACGC CGTGCTGATT
CAGGGCGAGT CGGACCCCCG TTTGGCTTCT TTCCTGGGAT TCAATATTTT GCAGGCTACG
GGAACGAGGC TGACGCGGGC GGATTACGTT TCCTGCCCGT CCTGCGGGCG TACCCTGTAC
AATATCCAGG AGGCGACGGC CCGCATCCGG AAAGCCACGG AACATCTGAA AGGGGTGAAG
ATTGCCGTGA TGGGATGTAT TGTGAATGGC CCCGGCGAGA TGGCGGATGC GGATTTCGGT
TATGTGGGCG GCGCGCCGAA CAAGATCAAC CTGTATGTGA AGCATACGCC TGTGAAGTTC
AATATTCCCC AGGAGGAGGC TGTGGAACGG CTGGTGGATC TGATCAAGGA GTATGGGCGG
TGGGTGGACC CCAAGTGA
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| Protein sequence | MQSSYCPSPY RYTRRVTREV MVGNVGVGGS NPIRIQSMLT SDTRDTDACV KEALELAEAG
CEIIRLTAQT KAYAANLENI ARELRAAGCH VPLVADIHFK PDAAMEAAKW VEKIRINPGN
FVDKKKFEVR EYSDAEYREE LDRLKEEFTP LVLFCREHGR AMRIGSNHGS LSDRILNRFG
DTPEGMVESA IEFAQIARDL DYHSLVFSMK ASNVKVMVAA YRLLVERMNA LGPDWNYPIH
LGVTEAGGGE DGRIKSAVGI GSLLTDGIGD TLRVSLTEDA VREVPVAYRL SNPFQPSERS
DDPVSFPEPE LSYDPLKFSK RQGGLAMYYG VRLGWEQPVR VAVPDAGFYA LQTEREAMGD
MMPELSLGQL DAIEVDPRCD ADLEPLKELA EPSIVTVKNG LAMEPVYAFR LLAARIEDRH
LILLKDTLVP GSVSGEDVPL TAARNIGSLL CDGIGDAVLI QGESDPRLAS FLGFNILQAT
GTRLTRADYV SCPSCGRTLY NIQEATARIR KATEHLKGVK IAVMGCIVNG PGEMADADFG
YVGGAPNKIN LYVKHTPVKF NIPQEEAVER LVDLIKEYGR WVDPK
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