Gene Amuc_1380 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagAmuc_1380 
Symbol 
ID6274461 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameAkkermansia muciniphila ATCC BAA-835 
KingdomBacteria 
Replicon accessionNC_010655 
Strand
Start bp1645119 
End bp1646225 
Gene Length1107 bp 
Protein Length368 aa 
Translation table11 
GC content62% 
IMG OID642613437 
ProductABC-2 type transporter 
Protein accessionYP_001877985 
Protein GI187735873 
COG category[V] Defense mechanisms 
COG ID[COG0842] ABC-type multidrug transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.607954 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.00000190775 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGACCGCCT CCCTCAAAAG AATAGGAGCC CTCATCGTCA AGGAACTCCA CCAGGTGGTC 
CGGGACCCCG GCAATGTGGG CATTGCGGTC ATCCTTCCGG CCGTGCTCCT GCTCCTCTTC
GGCTACGGCA TGAGCATGGA CATCAAAAAC GTGCGCATCG CGTACCTGGC CGTCCCCGCC
TCCAGCCAGT CCACGGACCT GGAAACAAGG CTTACCCTTT CCAGATATTT CCAGACCACG
CGCGTCTTCT CCACCCGGGA GGCTGAAGAA AAACTGCGCA CCCATGAAGC GGACGCCTTC
ATCGCCCTGC AAAGCAACGC GCCGGACACG CTCCACAATG GAACCACGAA AGTCCAGATT
GTCGTCAACG GAGTCAACGC CAACCAGGCC ACCCTCATCC GCAACTACCT TCAGGCCGTC
GTCGGCTCCT GGGCGTCTTC CCTGGGCGGG CGGACAGCCC CCGTGCTGGA CATGCAGACG
CGCACCCGCT TCAATGAAGC CAACGACAGC CACTACTACC TGGTTCCCGG CGTCATCGTC
ACCATCATGA CCATGATCGG GGCGCTCCTC ACCTCCCTGG TCATGGCGCG GGAATATGAA
CGCGGCACGC TGGAAAGCCT CTTCGTCACG CCCGTGGGCA GCGGAGAAAT CCTGGCGGCC
AAGGCCGCCA CCAACTTCCT GCTGGGCATG GTCAGCCTGG CTATCTCCAT GCTCTTCGCC
GCCTTCGTCT TCGGCATCCC CATCCGCGGC TCCCTCACTC TGCTGCTGGC GGTTTCCGCC
CTGTTCCTGA TTGTGGCCCT GGGGTTGGGG CTGGTCATCT CCACCGCCAC CAAAAACCAG
TTCCTGGCCT GCCAATTCGC CATTATGGGC ACCTTCATGC CGGCCCTCAT GCTGTCCGGC
TTCCTGTATG ACATCCTGAA CATGCCACCC GCCGTCCGGG CCATCACCTA CCTCATCCCG
GCCCGCTACT ACGTCACCCT GCTCCAGACC CTCTTCCTGG CCGGGGACAT CCCTTCCGTC
ATCATTCCCT GCTGCATCAC GCTGGGCGTC TTTGCCGTGG TGCTCATGGG AATCGCCAGG
ATGAAAGCAC CCAAATCCCT CGAATAG
 
Protein sequence
MTASLKRIGA LIVKELHQVV RDPGNVGIAV ILPAVLLLLF GYGMSMDIKN VRIAYLAVPA 
SSQSTDLETR LTLSRYFQTT RVFSTREAEE KLRTHEADAF IALQSNAPDT LHNGTTKVQI
VVNGVNANQA TLIRNYLQAV VGSWASSLGG RTAPVLDMQT RTRFNEANDS HYYLVPGVIV
TIMTMIGALL TSLVMAREYE RGTLESLFVT PVGSGEILAA KAATNFLLGM VSLAISMLFA
AFVFGIPIRG SLTLLLAVSA LFLIVALGLG LVISTATKNQ FLACQFAIMG TFMPALMLSG
FLYDILNMPP AVRAITYLIP ARYYVTLLQT LFLAGDIPSV IIPCCITLGV FAVVLMGIAR
MKAPKSLE