Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Amuc_1380 |
Symbol | |
ID | 6274461 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Akkermansia muciniphila ATCC BAA-835 |
Kingdom | Bacteria |
Replicon accession | NC_010655 |
Strand | - |
Start bp | 1645119 |
End bp | 1646225 |
Gene Length | 1107 bp |
Protein Length | 368 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 642613437 |
Product | ABC-2 type transporter |
Protein accession | YP_001877985 |
Protein GI | 187735873 |
COG category | [V] Defense mechanisms |
COG ID | [COG0842] ABC-type multidrug transport system, permease component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.607954 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.00000190775 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACCGCCT CCCTCAAAAG AATAGGAGCC CTCATCGTCA AGGAACTCCA CCAGGTGGTC CGGGACCCCG GCAATGTGGG CATTGCGGTC ATCCTTCCGG CCGTGCTCCT GCTCCTCTTC GGCTACGGCA TGAGCATGGA CATCAAAAAC GTGCGCATCG CGTACCTGGC CGTCCCCGCC TCCAGCCAGT CCACGGACCT GGAAACAAGG CTTACCCTTT CCAGATATTT CCAGACCACG CGCGTCTTCT CCACCCGGGA GGCTGAAGAA AAACTGCGCA CCCATGAAGC GGACGCCTTC ATCGCCCTGC AAAGCAACGC GCCGGACACG CTCCACAATG GAACCACGAA AGTCCAGATT GTCGTCAACG GAGTCAACGC CAACCAGGCC ACCCTCATCC GCAACTACCT TCAGGCCGTC GTCGGCTCCT GGGCGTCTTC CCTGGGCGGG CGGACAGCCC CCGTGCTGGA CATGCAGACG CGCACCCGCT TCAATGAAGC CAACGACAGC CACTACTACC TGGTTCCCGG CGTCATCGTC ACCATCATGA CCATGATCGG GGCGCTCCTC ACCTCCCTGG TCATGGCGCG GGAATATGAA CGCGGCACGC TGGAAAGCCT CTTCGTCACG CCCGTGGGCA GCGGAGAAAT CCTGGCGGCC AAGGCCGCCA CCAACTTCCT GCTGGGCATG GTCAGCCTGG CTATCTCCAT GCTCTTCGCC GCCTTCGTCT TCGGCATCCC CATCCGCGGC TCCCTCACTC TGCTGCTGGC GGTTTCCGCC CTGTTCCTGA TTGTGGCCCT GGGGTTGGGG CTGGTCATCT CCACCGCCAC CAAAAACCAG TTCCTGGCCT GCCAATTCGC CATTATGGGC ACCTTCATGC CGGCCCTCAT GCTGTCCGGC TTCCTGTATG ACATCCTGAA CATGCCACCC GCCGTCCGGG CCATCACCTA CCTCATCCCG GCCCGCTACT ACGTCACCCT GCTCCAGACC CTCTTCCTGG CCGGGGACAT CCCTTCCGTC ATCATTCCCT GCTGCATCAC GCTGGGCGTC TTTGCCGTGG TGCTCATGGG AATCGCCAGG ATGAAAGCAC CCAAATCCCT CGAATAG
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Protein sequence | MTASLKRIGA LIVKELHQVV RDPGNVGIAV ILPAVLLLLF GYGMSMDIKN VRIAYLAVPA SSQSTDLETR LTLSRYFQTT RVFSTREAEE KLRTHEADAF IALQSNAPDT LHNGTTKVQI VVNGVNANQA TLIRNYLQAV VGSWASSLGG RTAPVLDMQT RTRFNEANDS HYYLVPGVIV TIMTMIGALL TSLVMAREYE RGTLESLFVT PVGSGEILAA KAATNFLLGM VSLAISMLFA AFVFGIPIRG SLTLLLAVSA LFLIVALGLG LVISTATKNQ FLACQFAIMG TFMPALMLSG FLYDILNMPP AVRAITYLIP ARYYVTLLQT LFLAGDIPSV IIPCCITLGV FAVVLMGIAR MKAPKSLE
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