| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Amuc_1297 |
|---|
| Symbol | |
|---|
| ID | 6274175 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Akkermansia muciniphila ATCC BAA-835 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010655 |
|---|
| Strand | - |
|---|
| Start bp | 1572892 |
|---|
| End bp | 1573965 |
|---|
| Gene Length | 1074 bp |
|---|
| Protein Length | 357 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 642613353 |
|---|
| Product | putative substrate-binding protein of aliphatic sulfonate ABC transporter |
|---|
| Protein accession | YP_001877902 |
|---|
| Protein GI | 187735790 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0715] ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components |
|---|
| TIGRFAM ID | [TIGR01728] ABC transporter, substrate-binding protein, aliphatic sulfonates family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTGGAATT TTAATTTTAT CCCATTTAAA TACCTGTTCT ACCATTTTAT GAAAACTCTG
CCTCTTGCAT TAGATGCTCT TCTTTGTATT GGCGCTCTCC TGGTTCCAGC ATTTCTGGCA
TCCTGTCGGG AAGCATCCGA ACGGCAGGAT CAAATACGCT TTGGCCTTTT CCCCAACGTA
ACCCATGTCC AGGGGTTGGT TGCCAGGCAT TTCAGCCGCA CGGGGGAGGG ATGGTTTGAA
AAACGCATCT TTGAACGGAC GGGGAAAAAC ATCTCCATCC TATGGTATGC TTACAACGCC
GGCCCCAGTG CCATGGAAGC CATGTTCGCC AATTCCCTGG ATTTTACCTA CGTTGGTTCG
AGCCCTGCCA TTAATGCGTA TTCCAAATCC AATGGAACTC TCCTGCAAAT AGTAGCAGGA
GCCGTACAGG GAGGGTCCGG ACTGGTCGTC CCCACCCATT CCGAAGCACG AACACAAAAA
GACTTTCAAG GGAAAATCAT CGCTACCCCC CAATTGGGCA ATACTCAGGA TATAGCCTGC
CGGACATGGT TGGCCCTGGG AGGCGTAGCA GTCACTCAAT CCAGAGGAGA CGCAAGCATA
CTTCCTACCC CCAATCCAGA ACAGATATCT CTCTTTCGTC AAGGAAAACT AGACGGATCC
TGGACTGTAG AACCATGGAT TAGCCGCCTG GAAAAGGAAG CCGGAGGCAA GCTCCTGTTT
CTTGAAACGG ATGCCGTAAC TACTGTTCTG ACAGCCCAAA AGAGAATTCT GGAAAAACAG
CCGGACGTGG CACAGGCCAT TATTGAAGCT CACAGAGAAC TCACTTTCTG GATTATCGAA
CATCCCCAGG AAGCTCAAAA AATCGTCGTA GAAGAACTGA GGGAACTCAC CCGTTCCAGC
ATTGATCCCT CTTTAATTCT CCATGCATGG CCCAGGTTAG TTCCCACTAA TAAAATATCC
GAAGAAAAGC TCCAAGCATT TGCCAAGGAT ATGGTACGGA CTGGATTTTA CAAGGAACTT
CCCCGTGTCG AAGGCATCAT CCGGAATGAT AAAAATAATC CCAGCCATGA GTAG
|
|---|
| Protein sequence | MWNFNFIPFK YLFYHFMKTL PLALDALLCI GALLVPAFLA SCREASERQD QIRFGLFPNV
THVQGLVARH FSRTGEGWFE KRIFERTGKN ISILWYAYNA GPSAMEAMFA NSLDFTYVGS
SPAINAYSKS NGTLLQIVAG AVQGGSGLVV PTHSEARTQK DFQGKIIATP QLGNTQDIAC
RTWLALGGVA VTQSRGDASI LPTPNPEQIS LFRQGKLDGS WTVEPWISRL EKEAGGKLLF
LETDAVTTVL TAQKRILEKQ PDVAQAIIEA HRELTFWIIE HPQEAQKIVV EELRELTRSS
IDPSLILHAW PRLVPTNKIS EEKLQAFAKD MVRTGFYKEL PRVEGIIRND KNNPSHE
|
|---|
| |